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NC_020843.1__YP_007673680.1__VPHG_00198__00194

Bact-Vir

Identity

Accession:: NC_020843 ↗
Kingdom:: phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_11895-B1

TaxID: 754075

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-58

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.80	53.0	4.87e-01	89.7%	54.8%
3qqaA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.79	54.0	5.37e-01	77.6%	69.5%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.71	58.0	5.43e-01	91.4%	81.1%
1ku9A02	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.68	53.0	5.12e-01	93.1%	75.0%
2etnB01	1.10.287.180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain	0.63	49.0	4.50e-01	86.2%	67.1%
1u5tA01	6.10.140.180	Special › Helix non-globular › Helix Hairpins ›	0.62	51.0	4.86e-01	96.6%	77.6%
1ryp100	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.62	45.0	3.21e-01	84.5%	42.8%
4cc9B00	1.20.5.4730	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.61	46.0	3.92e-01	82.8%	62.2%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.61	53.0	4.81e-01	93.1%	77.3%
2fupA00	1.20.58.300	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like	0.60	53.0	4.10e-01	100.0%	98.4%
1cukA02	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.59	33.0	3.09e-01	72.4%	39.5%
4dhxB00	1.10.246.140	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1	0.59	42.0	3.77e-01	87.9%	51.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4936252	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.74	66.0	5.51e-01	96.6%	92.6%
3510680	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.73	51.0	4.75e-01	72.4%	82.9%
3901231	105.1.1.0 ↗	alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain	0.68	56.0	4.39e-01	89.7%	43.3%
3219921	5001.1.1.84 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz	0.67	58.0	3.64e-01	100.0%	18.7%
2602757	568.1.1.3 ↗	few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › UPF0203	0.65	44.0	4.66e-01	77.6%	80.4%
3183687	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.65	51.0	4.83e-01	89.7%	72.6%
3416663	4336.2.1.1 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2	0.55	42.0	3.72e-01	89.7%	55.6%
3699890	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.53	44.0	3.32e-01	91.4%	39.3%