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NC_020845.1__YP_007673771.1__CPMG_00025__00025

Bact-Vir

NC_020845.1__YP_007673771.1__CPMG_00025__00025

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-176
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.80 61.0 6.85e-01 97.9% 100.0%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.69 39.0 3.44e-01 96.6% 38.0%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 45.0 5.21e-01 99.3% 94.1%
2xq0A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.67 39.0 3.68e-01 100.0% 46.9%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 43.0 5.04e-01 91.1% 100.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 40.0 4.83e-01 93.8% 97.9%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 35.0 4.04e-01 97.3% 78.0%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 4.73e-01 92.5% 99.0%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.57e-01 97.3% 82.4%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 4.76e-01 93.8% 94.1%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 35.0 3.83e-01 99.3% 72.1%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.44e-01 96.6% 97.2%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.56 44.0 3.62e-01 84.2% 96.4%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.12e-01 93.2% 98.7%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 43.0 3.70e-01 81.5% 55.1%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 36.0 3.40e-01 100.0% 55.1%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.61e-01 81.5% 70.4%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.41e-01 95.2% 91.5%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 42.0 3.71e-01 81.5% 56.7%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 36.0 3.81e-01 72.6% 77.0%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 42.0 3.70e-01 81.5% 58.7%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.85e-01 100.0% 79.3%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 46.0 4.28e-01 89.7% 100.0%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.34e-01 94.5% 87.5%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.34e-01 79.5% 72.5%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.99e-01 93.2% 98.2%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 38.0 3.31e-01 73.3% 90.2%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.88e-01 97.3% 66.4%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.58e-01 94.5% 99.3%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 32.0 3.52e-01 89.7% 75.4%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.30e-01 97.3% 92.4%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 40.0 2.94e-01 80.8% 35.9%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 40.0 3.45e-01 81.5% 54.9%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.51 39.0 3.88e-01 89.0% 77.5%
2f1xB00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 44.0 4.53e-01 100.0% 97.2%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.50 42.0 3.52e-01 89.7% 79.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604637 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.72 47.0 5.18e-01 99.3% 81.7%
3257125 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.67 42.0 5.03e-01 92.5% 95.8%
3249250 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.67 43.0 5.22e-01 94.5% 100.0%
4990610 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 43.0 5.19e-01 92.5% 100.0%
5061301 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.65 44.0 3.76e-01 100.0% 42.5%
3973699 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.64 46.0 5.02e-01 100.0% 89.8%
3285854 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.63 48.0 5.14e-01 100.0% 91.5%
4937593 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 43.0 3.75e-01 72.6% 96.8%
5063745 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.61 37.0 3.38e-01 100.0% 44.5%
3249790 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 44.0 3.84e-01 99.3% 49.6%
4488223 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.59 42.0 3.29e-01 72.6% 92.3%
3740682 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 36.0 3.77e-01 74.0% 68.1%
4636309 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 44.0 3.92e-01 82.9% 75.8%
4034405 5084.5.2.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.56 36.0 2.50e-01 77.4% 20.9%
3523571 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 37.0 3.82e-01 74.0% 70.4%
4014757 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.56 43.0 4.53e-01 85.6% 87.4%
3869216 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 36.0 3.77e-01 73.3% 70.4%
3979069 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 43.0 4.65e-01 91.8% 99.2%
4162922 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.55 45.0 3.57e-01 88.4% 61.9%
3967388 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 47.0 3.69e-01 94.5% 87.3%
4304754 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 48.0 3.72e-01 93.8% 88.2%
3974567 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 44.0 3.61e-01 87.0% 63.4%
3165307 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.53 46.0 3.26e-01 91.8% 61.8%
3919708 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.53 41.0 3.85e-01 80.8% 87.2%
4347483 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 47.0 3.50e-01 93.8% 76.1%
5030450 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 41.0 4.11e-01 97.3% 82.8%
3706034 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 38.0 3.91e-01 76.7% 100.0%
4248693 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.52 47.0 4.34e-01 99.3% 95.7%
3872130 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 41.0 3.02e-01 82.9% 41.8%
3746837 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.52 40.0 3.72e-01 82.2% 83.7%
3903049 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 34.0 3.64e-01 73.3% 79.2%
3488824 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.51 40.0 3.02e-01 82.2% 45.8%
3601282 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 40.0 2.25e-01 82.9% 16.6%
3529726 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 35.0 3.71e-01 72.6% 80.0%
3272671 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 34.0 3.55e-01 73.3% 75.4%
139764 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.50 45.0 3.69e-01 98.6% 88.2%