←Back to structures

NC_020845.1__YP_007673804.1__CPMG_00058__00058

Bact-Vir

NC_020845.1__YP_007673804.1__CPMG_00058__00058

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-112
PDB
Domain cluster: rep: NC_048048.2__YP_009810236.1__HOU03_gp024__00024__D4-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26096.1 best DUF8033 76.4 1.50e-21 84.3% 89.7%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.70 48.0 3.94e-01 70.8% 82.3%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 49.0 3.87e-01 75.3% 81.7%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.67 46.0 3.62e-01 70.8% 84.0%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.63 44.0 2.90e-01 70.8% 56.7%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.63 47.0 3.85e-01 86.5% 44.5%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 45.0 4.28e-01 100.0% 62.6%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.58 38.0 4.42e-01 79.8% 98.3%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.57 34.0 3.24e-01 82.0% 51.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 38.0 4.22e-01 73.0% 88.4%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 33.0 3.96e-01 91.0% 89.7%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.54 43.0 3.81e-01 84.3% 89.7%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.54 39.0 3.60e-01 95.5% 59.8%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.84e-01 82.0% 39.3%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.86e-01 83.1% 37.8%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 32.0 3.52e-01 98.9% 76.8%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.85e-01 82.0% 56.6%
2bcoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 3.21e-01 96.6% 63.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.53 45.0 3.55e-01 96.6% 91.8%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.52 45.0 2.82e-01 100.0% 80.2%
3r90A00 3.10.400.20 Alpha Beta › Roll › Sulfate adenylyltransferase › 0.52 45.0 3.53e-01 94.4% 91.9%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.76e-01 84.3% 45.3%
4j87A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.08e-01 100.0% 87.7%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.70e-01 84.3% 37.3%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 3.36e-01 83.1% 75.7%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.31e-01 77.5% 92.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4797891 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.72 44.0 4.95e-01 93.3% 79.7%
4996528 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.70 34.0 4.36e-01 88.8% 82.0%
3619159 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.69 47.0 4.64e-01 70.8% 66.3%
3717674 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 48.0 4.83e-01 100.0% 75.6%
4386761 292.2.1.3 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.66 43.0 4.18e-01 100.0% 60.0%
1348267 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.62 41.0 4.14e-01 70.8% 65.9%
3613292 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 3.20e-01 82.0% 54.6%
3231343 77.1.1.10 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.62 47.0 4.13e-01 86.5% 54.6%
3417207 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.84e-01 77.5% 54.2%
3976684 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.58 39.0 4.13e-01 94.4% 77.5%
3832075 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 44.0 2.76e-01 82.0% 37.8%
3601989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.86e-01 83.1% 31.9%
3803383 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 43.0 2.95e-01 83.1% 38.8%
3929337 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.56 42.0 2.91e-01 78.7% 39.0%
3628862 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 3.05e-01 77.5% 53.3%
3494509 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.56 42.0 2.62e-01 79.8% 53.3%
3614325 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 43.0 4.20e-01 100.0% 75.8%
4989777 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 3.06e-01 86.5% 33.0%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.55 41.0 2.89e-01 86.5% 25.7%
4891048 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 41.0 2.57e-01 77.5% 58.1%
3268583 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.55 41.0 4.25e-01 78.7% 97.6%
5045984 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.55 40.0 4.15e-01 77.5% 90.6%
3992658 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.55 40.0 2.97e-01 76.4% 54.1%
3612157 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 40.0 2.62e-01 77.5% 31.9%
3172941 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.72e-01 85.4% 29.4%
3634343 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.54 39.0 2.46e-01 77.5% 28.4%
3931562 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.53 46.0 3.43e-01 95.5% 55.6%
3922884 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.53 41.0 2.74e-01 83.1% 43.1%
142988 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.53 40.0 3.98e-01 78.7% 91.2%
4931992 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.53 39.0 4.26e-01 77.5% 98.7%
3582902 5.1.10.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.52 38.0 3.38e-01 75.3% 68.8%
3742689 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.52 39.0 2.62e-01 77.5% 37.5%
3301602 5.1.2.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.52 40.0 3.19e-01 82.0% 69.4%
3710260 5.1.3.244 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BBS2_N, BBS2_Mid 0.52 40.0 2.66e-01 82.0% 50.3%
3248495 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 41.0 2.77e-01 84.3% 47.7%
3520790 3735.1.1.0 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.52 41.0 2.77e-01 84.3% 24.7%
3598659 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.72e-01 86.5% 45.9%
3888662 5.1.4.546 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CFAP43_N 0.52 40.0 2.78e-01 87.6% 41.7%
3487549 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 40.0 2.39e-01 87.6% 17.0%
3825153 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.71e-01 91.0% 29.3%
3739946 5.1.4.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.51 42.0 2.78e-01 91.0% 42.3%
3232489 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 39.0 2.63e-01 82.0% 34.4%
3262209 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.50 37.0 3.75e-01 77.5% 88.9%
4280524 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.50 39.0 2.61e-01 86.5% 38.3%