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NC_020845.1__YP_007673811.1__CPMG_00065__00065

Bact-Vir

NC_020845.1__YP_007673811.1__CPMG_00065__00065

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: rep: KF156338.1__AHB80475.1__S-MbCM7_061__00061__D60-131
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.68 57.0 4.91e-01 92.1% 100.0%
5ly3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 42.0 3.13e-01 71.1% 72.4%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 4.37e-01 77.6% 95.6%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 43.0 4.03e-01 72.4% 97.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.50e-01 77.6% 41.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 35.0 4.28e-01 76.3% 97.8%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.95e-01 96.1% 68.1%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 46.0 3.08e-01 96.1% 32.6%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 39.0 3.71e-01 75.0% 97.8%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 32.0 3.40e-01 88.2% 65.2%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.87e-01 85.5% 66.7%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.48e-01 72.4% 92.8%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.79e-01 81.6% 71.1%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.93e-01 97.4% 29.8%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.85e-01 84.2% 77.5%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.90e-01 96.1% 21.1%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 42.0 3.06e-01 94.7% 30.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.34e-01 77.6% 70.5%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 41.0 3.56e-01 92.1% 86.7%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 36.0 2.43e-01 73.7% 89.1%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 42.0 2.94e-01 97.4% 26.7%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.59e-01 86.8% 69.6%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.50 36.0 3.03e-01 80.3% 91.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.50 37.0 3.45e-01 85.5% 61.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1117317 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.67 46.0 5.00e-01 90.8% 85.7%
4121572 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.67 48.0 3.09e-01 94.7% 16.3%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 43.0 3.52e-01 96.1% 40.0%
3647467 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.61 40.0 3.49e-01 89.5% 45.2%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 4.15e-01 97.4% 60.0%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 4.14e-01 84.2% 85.5%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.59 49.0 4.42e-01 92.1% 77.1%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 34.0 3.93e-01 85.5% 84.0%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.59 38.0 3.36e-01 78.9% 43.2%
2410067 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 33.0 3.69e-01 88.2% 68.9%
5012551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 4.06e-01 85.5% 71.2%
4978169 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 39.0 3.31e-01 72.4% 86.7%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 41.0 4.13e-01 86.8% 77.3%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 37.0 3.84e-01 84.2% 72.9%
5061231 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 29.0 3.19e-01 86.8% 58.3%
4352991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 4.14e-01 80.3% 88.3%
3505993 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.07e-01 96.1% 21.4%
3227023 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.60e-01 97.4% 44.3%
3937459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.34e-01 97.4% 79.0%
4031110 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.95e-01 96.1% 82.4%
397140 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.54 39.0 3.81e-01 80.3% 72.7%
3375459 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 3.21e-01 96.1% 31.0%
4959983 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 4.20e-01 84.2% 100.0%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.86e-01 78.9% 77.5%
3409459 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.53 41.0 3.71e-01 85.5% 84.5%
4370161 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.53 38.0 3.00e-01 75.0% 73.1%
5050610 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 4.27e-01 85.5% 91.4%
3920678 5.1.5.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.53 44.0 2.90e-01 96.1% 20.6%
4817067 5.1.4.323 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st 0.53 45.0 3.51e-01 97.4% 49.7%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.79e-01 96.1% 74.4%
3940153 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 2.94e-01 96.1% 27.2%
3226259 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 37.0 2.89e-01 77.6% 33.5%
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.52 44.0 3.47e-01 93.4% 67.7%
4932470 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.78e-01 85.5% 77.8%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.55e-01 78.9% 81.7%
5015458 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 31.0 3.13e-01 80.3% 57.5%
3243274 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 2.93e-01 100.0% 38.5%
4997204 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 38.0 3.39e-01 84.2% 61.7%