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NC_020845.1__YP_007673843.1__CPMG_00097__00097

Bact-Vir

NC_020845.1__YP_007673843.1__CPMG_00097__00097

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

View cluster (74 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-226
PDB
Domain cluster: rep: IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033132__D7-193
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23849.3 best Phage_TTP_2 113.9 1.30e-32 98.6% 97.2%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.73 48.0 5.61e-01 98.6% 91.9%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.72 48.0 5.47e-01 97.6% 88.1%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.71 46.0 5.42e-01 98.6% 91.2%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.71 50.0 5.65e-01 98.6% 92.0%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 45.0 5.40e-01 97.6% 94.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 48.0 5.48e-01 98.6% 91.7%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 34.0 3.96e-01 99.5% 68.0%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 27.0 4.00e-01 95.2% 86.5%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 34.0 4.20e-01 99.0% 91.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 18.0 2.98e-01 94.7% 73.2%
6ruiK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 23.0 3.16e-01 96.2% 68.0%
6td3B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 27.0 3.65e-01 95.2% 83.5%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 33.0 3.89e-01 99.5% 80.4%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 35.0 4.10e-01 98.6% 84.1%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 23.0 3.12e-01 88.5% 70.1%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 34.0 3.94e-01 98.1% 85.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 22.0 3.47e-01 95.2% 94.9%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.54 34.0 4.10e-01 95.7% 96.3%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 25.0 3.36e-01 84.1% 84.3%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 31.0 3.81e-01 97.6% 95.0%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 23.0 3.07e-01 88.5% 75.0%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 24.0 3.54e-01 78.8% 98.9%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 24.0 3.17e-01 88.0% 80.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.92 64.0 7.44e-01 99.5% 94.2%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.90 59.0 7.15e-01 100.0% 95.2%
2101663 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.90 64.0 7.27e-01 98.6% 92.0%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.90 58.0 6.94e-01 100.0% 91.9%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.89 59.0 7.15e-01 100.0% 97.9%
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.89 63.0 7.42e-01 97.6% 100.0%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.88 60.0 7.16e-01 100.0% 96.6%
4995820 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.87 54.0 6.88e-01 96.6% 100.0%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.86 55.0 6.74e-01 100.0% 95.7%
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.86 48.0 6.44e-01 99.5% 99.1%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.85 60.0 7.00e-01 100.0% 98.0%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.84 58.0 6.67e-01 99.5% 91.2%
2101633 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.84 54.0 5.96e-01 100.0% 79.6%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.83 50.0 4.51e-01 99.0% 45.9%
3942090 1.1.5.77 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.82 53.0 5.95e-01 99.0% 81.2%
3944178 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 46.0 6.17e-01 97.1% 100.0%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.81 53.0 5.94e-01 100.0% 82.4%
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.81 53.0 5.81e-01 99.5% 79.7%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.80 46.0 5.81e-01 98.6% 92.9%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 48.0 6.10e-01 96.2% 100.0%
3942828 1.1.13.39 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.79 54.0 6.41e-01 100.0% 99.3%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 49.0 6.16e-01 98.1% 100.0%
3977123 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.76 49.0 5.60e-01 98.6% 84.4%
3502370 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.76 53.0 6.03e-01 98.6% 93.1%
4009489 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.74 49.0 5.64e-01 98.6% 89.7%
1124583 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.73 48.0 5.61e-01 98.6% 91.9%
3590380 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 53.0 5.71e-01 99.5% 86.7%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 51.0 5.84e-01 100.0% 96.8%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 47.0 4.28e-01 98.6% 50.4%
1563850 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.72 48.0 5.47e-01 97.6% 88.1%
4929752 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.71 49.0 5.60e-01 97.6% 92.9%
3943316 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 51.0 5.71e-01 98.6% 94.4%
136185 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.71 50.0 5.65e-01 98.6% 92.0%
3969384 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 50.0 5.72e-01 98.6% 95.0%
4888732 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 44.0 5.05e-01 97.6% 83.3%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 52.0 5.92e-01 97.6% 100.0%
4033579 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.69 42.0 5.33e-01 93.3% 100.0%
3164699 1.1.13.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.69 40.0 5.14e-01 95.2% 100.0%
4954561 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 45.0 5.44e-01 96.2% 100.0%
184986 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 41.0 5.18e-01 95.7% 99.2%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 44.0 5.33e-01 94.2% 100.0%
4032562 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 42.0 5.21e-01 95.2% 100.0%
4952429 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 34.0 4.67e-01 94.7% 99.0%
5004559 1.1.13.75 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.66 43.0 5.23e-01 93.3% 100.0%
3494040 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 29.0 3.38e-01 86.5% 69.7%
4027705 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.54 36.0 4.18e-01 98.6% 94.5%
3595951 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 30.0 3.50e-01 99.5% 76.6%
3255075 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 28.0 3.44e-01 99.5% 80.0%
3970985 304.124.1.9 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.52 34.0 4.02e-01 95.2% 97.1%
3926912 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.52 38.0 4.27e-01 99.5% 98.1%
3478734 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 29.0 3.81e-01 78.8% 97.5%