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NC_020845.1__YP_007673845.1__CPMG_00099__00099

Bact-Vir

NC_020845.1__YP_007673845.1__CPMG_00099__00099

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-152
PDB
Domain cluster: rep: NC_047714.1__YP_009778730.1__HOQ63_gp003__00003__D26-125
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26869.1 best Phage_T4_gp2 35.4 8.40e-09 64.9% 20.8%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.81 38.0 5.46e-01 75.7% 100.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 37.0 5.38e-01 72.1% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 41.0 5.47e-01 73.9% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 40.0 5.43e-01 74.8% 98.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 45.0 5.68e-01 77.5% 100.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 33.0 4.85e-01 72.1% 97.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 38.0 5.18e-01 74.8% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 36.0 4.70e-01 73.0% 84.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 33.0 4.66e-01 72.1% 94.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 38.0 4.85e-01 84.7% 92.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 42.0 4.57e-01 75.7% 71.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 40.0 4.65e-01 74.8% 81.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 34.0 4.67e-01 80.2% 98.1%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.93e-01 88.3% 86.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 37.0 4.91e-01 71.2% 100.0%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 41.0 4.85e-01 79.3% 89.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.93e-01 89.2% 93.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 37.0 4.76e-01 71.2% 96.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 37.0 4.61e-01 70.3% 92.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 35.0 4.70e-01 71.2% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 37.0 4.32e-01 72.1% 78.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 35.0 4.65e-01 78.4% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 39.0 4.70e-01 75.7% 91.9%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 4.44e-01 70.3% 88.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.43e-01 76.6% 83.3%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 51.0 4.34e-01 90.1% 87.8%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.61 49.0 4.24e-01 86.5% 91.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.04e-01 85.6% 79.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.04e-01 84.7% 78.1%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.74e-01 91.9% 60.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 34.0 4.11e-01 72.1% 95.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.91e-01 94.6% 60.3%
2btwA00 3.90.70.30 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain 0.55 43.0 3.55e-01 84.7% 55.2%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 42.0 3.42e-01 84.7% 47.4%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 31.0 3.26e-01 85.6% 61.9%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.68e-01 83.8% 63.1%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 31.0 3.46e-01 89.2% 75.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.51 42.0 4.33e-01 90.1% 90.8%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.49e-01 85.6% 92.3%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4284778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 48.0 5.77e-01 86.5% 100.0%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.74e-01 84.7% 96.5%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 49.0 5.41e-01 82.0% 87.8%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 42.0 5.09e-01 75.7% 89.3%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.71 41.0 5.02e-01 74.8% 91.4%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.70 51.0 5.75e-01 87.4% 97.6%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 40.0 4.89e-01 73.9% 90.0%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.69 38.0 5.04e-01 75.7% 100.0%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.58e-01 83.8% 95.3%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.69 41.0 4.83e-01 75.7% 86.7%
3909202 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 40.0 4.82e-01 73.9% 90.0%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 38.0 4.94e-01 71.2% 100.0%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.58e-01 92.8% 67.0%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 44.0 4.09e-01 79.3% 52.9%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 3.56e-01 82.0% 36.5%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.59e-01 85.6% 96.7%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 36.0 4.50e-01 71.2% 87.7%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.89e-01 81.1% 88.7%
3905176 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 39.0 4.93e-01 73.9% 100.0%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 37.0 4.56e-01 72.1% 87.1%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 36.0 4.61e-01 72.1% 92.2%
3778124 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 35.0 4.40e-01 70.3% 86.2%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.83e-01 79.3% 98.5%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 41.0 5.06e-01 77.5% 100.0%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.66 44.0 3.99e-01 91.9% 50.7%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 40.0 4.61e-01 76.6% 83.7%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 37.0 4.25e-01 71.2% 75.9%
3240651 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 36.0 4.16e-01 72.1% 73.8%
4474739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.58e-01 77.5% 86.7%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 35.0 4.39e-01 71.2% 87.7%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 36.0 4.68e-01 73.9% 100.0%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 35.0 4.19e-01 72.1% 77.3%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 36.0 4.08e-01 74.8% 70.6%
4078549 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.64 43.0 3.89e-01 90.1% 50.7%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 37.0 4.67e-01 73.9% 96.9%
3801650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.67e-01 73.0% 83.3%
2725406 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 42.0 4.78e-01 81.1% 90.2%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.64 39.0 4.66e-01 82.9% 95.7%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.70e-01 82.0% 78.1%
4056584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 35.0 4.07e-01 73.0% 75.0%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.63 46.0 4.79e-01 76.6% 84.0%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.47e-01 76.6% 86.3%
3473407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.46e-01 73.9% 88.0%
3275383 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.62 51.0 4.12e-01 89.2% 92.7%
4217839 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.62 49.0 4.23e-01 85.6% 88.9%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 38.0 4.59e-01 73.9% 95.7%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 36.0 4.58e-01 77.5% 98.5%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.62 36.0 3.12e-01 74.8% 37.1%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.62 36.0 4.29e-01 72.1% 85.3%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 36.0 3.97e-01 70.3% 72.2%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 42.0 3.58e-01 86.5% 44.6%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 5.03e-01 81.1% 100.0%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.61 40.0 4.57e-01 82.9% 97.3%
3897333 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 41.0 4.63e-01 79.3% 96.2%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 37.0 4.43e-01 82.0% 93.3%
3819164 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 46.0 4.00e-01 82.9% 70.0%
3850131 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 41.0 4.61e-01 79.3% 94.1%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 48.0 4.83e-01 88.3% 100.0%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 48.0 4.90e-01 88.3% 98.1%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.58e-01 81.1% 91.5%
3310575 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 45.0 4.66e-01 84.7% 100.0%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.48e-01 84.7% 94.1%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 4.33e-01 72.1% 98.7%
3503000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.60e-01 77.5% 100.0%
4007401 4.1.1.393 ↗ beta barrels › SH3 › SH3 › SH3 › PF29414 0.55 38.0 3.89e-01 71.2% 100.0%
3978295 107.1.1.18 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › PF29414 0.55 46.0 3.83e-01 92.8% 92.0%
3575581 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 45.0 3.88e-01 87.4% 59.4%
3275632 219.1.1.19 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 0.54 43.0 3.15e-01 85.6% 47.4%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.84e-01 84.7% 78.0%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.85e-01 91.0% 67.1%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 41.0 3.31e-01 89.2% 42.2%
3494307 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.51 39.0 3.80e-01 82.9% 71.2%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.51 38.0 3.59e-01 77.5% 69.6%
3480657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.07e-01 89.2% 81.6%
3508925 107.1.1.18 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › PF29414 0.50 43.0 3.71e-01 96.4% 94.1%