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NC_020845.1__YP_007673917.1__CPMG_00172__00171

Bact-Vir

NC_020845.1__YP_007673917.1__CPMG_00172__00171

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-233
PDB
Domain cluster: rep: IMGVR_UViG_3300000154_000252-3300000154-SI47jul10_150mDRAFT_10055545__D35-106
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 45.0 3.98e-01 71.8% 50.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 4.11e-01 71.8% 56.4%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.64 30.0 3.23e-01 77.5% 50.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 44.0 3.88e-01 73.2% 47.7%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 43.0 3.61e-01 74.6% 57.1%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 43.0 3.46e-01 98.6% 36.3%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.57 39.0 4.19e-01 80.3% 87.9%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 41.0 3.95e-01 100.0% 66.7%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.56 47.0 3.64e-01 98.6% 63.4%
5eupA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 41.0 3.44e-01 77.5% 49.2%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 48.0 3.04e-01 100.0% 59.1%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.55 38.0 2.87e-01 71.8% 72.7%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 45.0 3.05e-01 93.0% 59.9%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 41.0 3.63e-01 81.7% 55.8%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.53 39.0 3.25e-01 78.9% 46.7%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 44.0 3.00e-01 93.0% 61.1%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 44.0 3.01e-01 93.0% 61.5%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 38.0 3.15e-01 77.5% 53.5%
2ba0A03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 44.0 4.26e-01 100.0% 83.1%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 37.0 3.33e-01 85.9% 54.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 46.0 4.06e-01 71.8% 48.2%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 47.0 4.00e-01 71.8% 48.7%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.67 47.0 3.94e-01 73.2% 46.0%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 48.0 4.46e-01 76.1% 61.1%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.67 46.0 4.15e-01 71.8% 68.4%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 45.0 3.84e-01 70.4% 46.1%
3859550 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 44.0 3.75e-01 73.2% 44.2%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 42.0 3.59e-01 70.4% 41.7%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 43.0 4.02e-01 74.6% 56.8%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 43.0 3.57e-01 74.6% 39.3%
3515407 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 43.0 3.34e-01 73.2% 48.2%
4410759 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 44.0 3.84e-01 76.1% 47.0%
3714115 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.61 52.0 3.38e-01 100.0% 49.5%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 43.0 3.62e-01 76.1% 40.7%
4029803 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 43.0 3.60e-01 76.1% 41.5%
4224821 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 41.0 3.58e-01 71.8% 46.1%
3718200 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 42.0 3.60e-01 76.1% 47.2%
3607779 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.59 40.0 2.65e-01 71.8% 37.6%
4973468 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 41.0 3.42e-01 76.1% 55.0%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 40.0 3.47e-01 77.5% 43.3%
3261727 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.58 46.0 3.98e-01 87.3% 93.0%
5064344 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.57 42.0 3.30e-01 78.9% 90.3%
3229643 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 40.0 3.47e-01 76.1% 44.2%
2507442 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 45.0 3.45e-01 85.9% 87.8%
3948330 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 42.0 3.63e-01 77.5% 60.0%
3538408 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 39.0 3.66e-01 76.1% 58.9%
3290063 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 40.0 3.41e-01 95.8% 45.6%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.55 35.0 2.60e-01 80.3% 23.0%
4646939 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 36.0 2.51e-01 70.4% 53.8%
3788897 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.53 39.0 2.22e-01 80.3% 28.2%
3705134 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 37.0 2.36e-01 76.1% 91.6%
3924318 6166.1.1.0 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.52 32.0 2.38e-01 78.9% 21.5%
3271973 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 41.0 2.78e-01 87.3% 41.4%
3974474 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 35.0 3.27e-01 74.6% 55.6%
4928803 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 33.0 3.12e-01 70.4% 54.1%
3751173 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.51 39.0 3.89e-01 84.5% 93.3%
3948049 2002.1.1.93 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_77 0.51 42.0 2.47e-01 91.5% 24.1%
3670599 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 35.0 2.90e-01 73.2% 68.9%
3482761 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 43.0 2.70e-01 94.4% 70.5%
3879800 601.3.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › IQUB 0.50 36.0 3.04e-01 80.3% 61.4%
D2 medium residues 93-160
PDB
Domain cluster: representative