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NC_020845.1__YP_007673937.1__CPMG_00192__00191

Bact-Vir

NC_020845.1__YP_007673937.1__CPMG_00192__00191

Identity

Accession:
NC_020845 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eurybiavirus› Prochlorococcus_phage_MED4-213

TaxID: 889956

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-127
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.97 70.0 8.18e-01 94.2% 100.0%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.86 47.0 5.96e-01 83.5% 87.7%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 46.0 5.61e-01 85.4% 88.2%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 40.0 4.98e-01 83.5% 80.6%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 43.0 5.13e-01 82.5% 78.9%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 44.0 5.10e-01 86.4% 77.0%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 42.0 5.02e-01 84.5% 77.5%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 4.89e-01 90.3% 56.2%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 44.0 5.18e-01 85.4% 81.9%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 5.25e-01 86.4% 84.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 43.0 5.47e-01 82.5% 98.3%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 45.0 4.50e-01 85.4% 60.0%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 43.0 4.79e-01 84.5% 73.2%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 4.31e-01 84.5% 60.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 39.0 5.13e-01 88.3% 96.6%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 4.99e-01 83.5% 83.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.65 41.0 4.57e-01 96.1% 83.1%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.94e-01 92.2% 90.1%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.64 40.0 4.20e-01 88.3% 69.9%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 3.97e-01 95.1% 79.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.94 69.0 7.89e-01 98.1% 98.7%
3505097 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.79 47.0 5.16e-01 83.5% 72.9%
3167351 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.78 46.0 4.92e-01 85.4% 68.2%
4029154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 51.0 4.88e-01 89.3% 58.0%
3704663 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 47.0 5.48e-01 85.4% 85.3%
4993070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.90e-01 88.3% 94.7%
3592467 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 46.0 5.33e-01 85.4% 84.0%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.75 40.0 5.36e-01 85.4% 98.2%
4030048 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 53.0 5.28e-01 90.3% 71.4%
3621457 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 44.0 5.26e-01 85.4% 87.1%
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 43.0 5.47e-01 82.5% 98.3%
3398219 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.74 45.0 4.69e-01 85.4% 66.3%
3396989 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 43.0 4.44e-01 85.4% 61.0%
4030011 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.73 47.0 4.99e-01 82.5% 74.4%
3598657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 4.42e-01 84.5% 61.0%
3277139 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 44.0 4.29e-01 85.4% 55.7%
3606838 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 4.47e-01 85.4% 64.2%
2581118 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 42.0 4.09e-01 84.5% 52.6%
5081091 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.58e-01 86.4% 87.4%
3699819 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.67 46.0 4.77e-01 85.4% 75.8%
3706504 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 46.0 5.07e-01 93.2% 87.1%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 40.0 3.89e-01 85.4% 56.4%
3187241 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 50.0 4.95e-01 85.4% 77.3%
3168996 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 49.0 4.64e-01 92.2% 68.0%
4017204 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 46.0 4.66e-01 88.3% 82.0%
3658986 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 29.0 3.19e-01 94.2% 56.5%
3702664 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.59 44.0 3.98e-01 83.5% 57.9%
4978997 2004.1.2.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.59 45.0 3.11e-01 84.5% 55.0%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.58 36.0 4.12e-01 84.5% 85.3%
3668787 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 46.0 4.68e-01 94.2% 86.0%
3250542 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 40.0 4.13e-01 82.5% 75.0%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.99e-01 86.4% 91.4%
3169596 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 44.0 4.16e-01 85.4% 70.4%
3614413 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.53 47.0 4.39e-01 95.1% 87.2%
3322482 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.52 39.0 2.57e-01 78.6% 30.9%
4075998 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.52 43.0 3.38e-01 91.3% 82.7%
3781750 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.51 36.0 2.99e-01 75.7% 38.6%