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NC_020847.1__YP_007674037.1__CPAG_00001__00001

Bact-Vir

NC_020847.1__YP_007674037.1__CPAG_00001__00001

Identity

Accession:
NC_020847 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Prochlorococcus_phage_MED4-184

TaxID: 889955

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-110
PDB
Domain cluster: rep: IMGVR_UViG_3300038974_000877-3300038974-Ga0416721_000556_7160_7909__D157-239
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.80 68.0 6.59e-01 100.0% 82.3%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 68.0 6.48e-01 100.0% 96.9%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 65.0 6.21e-01 98.9% 100.0%
4jdmA03 2.60.120.1340 Mainly Beta › Sandwich › Jelly Rolls › 0.68 60.0 5.01e-01 100.0% 88.3%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 61.0 5.79e-01 98.9% 83.3%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 57.0 4.84e-01 100.0% 98.6%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.63 56.0 4.87e-01 100.0% 95.6%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.77e-01 100.0% 99.3%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.61 55.0 5.04e-01 100.0% 97.4%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 53.0 5.27e-01 100.0% 93.6%
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 54.0 4.64e-01 100.0% 92.3%
3fcsA03 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.61 50.0 4.32e-01 100.0% 56.8%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 50.0 3.14e-01 100.0% 15.9%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.60 43.0 3.94e-01 100.0% 55.9%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.60 54.0 4.88e-01 100.0% 87.2%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.60 47.0 4.41e-01 100.0% 68.2%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.24e-01 100.0% 86.3%
3kt7A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.59 46.0 3.44e-01 86.2% 80.5%
2xdhA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 4.19e-01 100.0% 56.5%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.07e-01 100.0% 98.5%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.82e-01 98.9% 97.3%
2pn5A10 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.59 49.0 4.21e-01 100.0% 56.2%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.59 51.0 4.04e-01 100.0% 73.2%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.77e-01 100.0% 84.5%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.59e-01 100.0% 95.9%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 4.06e-01 100.0% 87.1%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.34e-01 100.0% 86.3%
6etzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 50.0 3.84e-01 98.9% 83.4%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.54e-01 100.0% 90.8%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.89e-01 100.0% 89.2%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 4.26e-01 100.0% 80.9%
7y6oA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.52e-01 98.9% 87.6%
2fctB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 48.0 3.38e-01 100.0% 54.8%
4ak2A01 2.60.40.2720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.43e-01 100.0% 81.2%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 48.0 3.48e-01 100.0% 46.3%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 48.0 3.47e-01 100.0% 42.4%
4rsvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.36e-01 100.0% 86.7%
3e7jA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.21e-01 100.0% 36.9%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.52 45.0 4.35e-01 100.0% 98.1%
1iv8A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 31.0 3.36e-01 98.9% 75.8%
6f91A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 40.0 2.87e-01 86.2% 64.4%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.51 39.0 4.03e-01 95.4% 93.8%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.51 40.0 3.67e-01 89.7% 78.7%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.51 44.0 3.73e-01 100.0% 58.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491354 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.79 64.0 6.24e-01 100.0% 78.1%
4010284 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.77 65.0 6.12e-01 100.0% 75.0%
4936902 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.77 67.0 6.95e-01 98.9% 100.0%
5081149 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.77 59.0 6.48e-01 95.4% 100.0%
3978478 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.77 63.0 5.59e-01 100.0% 62.1%
3649226 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.74 58.0 3.71e-01 100.0% 17.8%
3270934 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.74 69.0 6.43e-01 98.9% 98.1%
3249250 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.73 68.0 6.60e-01 100.0% 97.9%
3253503 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.72 67.0 6.55e-01 100.0% 97.9%
3604637 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.72 65.0 5.82e-01 98.9% 73.0%
3257125 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.71 66.0 6.37e-01 98.9% 97.9%
3973699 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.70 64.0 5.76e-01 100.0% 81.4%
2448383 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.68 62.0 5.49e-01 100.0% 70.5%
3241031 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.65 58.0 5.32e-01 100.0% 93.9%
3611495 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 57.0 4.83e-01 100.0% 92.1%
3392335 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.63 56.0 4.70e-01 100.0% 86.0%
4945363 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 50.0 4.94e-01 100.0% 80.0%
4404708 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.62 48.0 5.06e-01 100.0% 100.0%
1489395 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.62 54.0 5.33e-01 100.0% 92.6%
5064207 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 56.0 5.33e-01 100.0% 100.0%
3715744 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 51.0 4.71e-01 100.0% 71.8%
3907282 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.61 52.0 4.45e-01 100.0% 57.2%
5007540 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 49.0 4.03e-01 100.0% 46.2%
4029291 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 4.50e-01 100.0% 60.0%
5008671 11.1.5.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Cohesin 0.60 49.0 4.11e-01 100.0% 52.0%
4448434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 51.0 4.44e-01 100.0% 88.6%
3972375 10.20.1.3 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Transglut_i_TM 0.58 45.0 4.17e-01 100.0% 65.5%
4341145 10.32.1.238 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.58 51.0 4.40e-01 100.0% 89.3%
3250212 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.58 49.0 4.29e-01 100.0% 60.7%
3222667 387.1.1.69 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › DUF7808 0.58 52.0 4.45e-01 100.0% 85.0%
3598266 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 51.0 4.26e-01 98.9% 94.7%
4944535 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 50.0 3.55e-01 100.0% 41.0%
3955793 10.20.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.57 46.0 4.03e-01 100.0% 57.0%
3281166 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.57 45.0 4.19e-01 100.0% 66.1%
2859191 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 50.0 3.96e-01 100.0% 49.7%
3466694 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 49.0 4.20e-01 100.0% 59.3%
3952750 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.57 44.0 4.23e-01 100.0% 73.0%
3989692 4081.1.1.12 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.57 50.0 3.79e-01 100.0% 41.0%
3491700 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.99e-01 100.0% 51.9%
3792868 11.1.5.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 0.56 49.0 4.42e-01 100.0% 84.7%
3620151 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 4.38e-01 95.4% 95.7%
3281898 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 49.0 3.48e-01 100.0% 43.6%
4215475 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.55 48.0 2.86e-01 100.0% 16.4%
4010814 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 49.0 3.44e-01 100.0% 38.6%
4174868 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.55 48.0 2.83e-01 100.0% 15.8%
5083222 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.55 48.0 2.88e-01 100.0% 16.1%
5007335 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 48.0 3.92e-01 100.0% 64.2%
1144292 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.54 48.0 3.48e-01 100.0% 46.5%
3401442 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.54 42.0 3.76e-01 100.0% 57.0%
1296266 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.54 48.0 3.47e-01 100.0% 42.7%
5050655 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.96e-01 100.0% 70.5%
3897495 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.13e-01 100.0% 70.0%
3274779 11.1.1.701 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_SIBA-E_3rd 0.53 47.0 3.78e-01 97.7% 52.4%
4326361 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.53 47.0 3.29e-01 100.0% 37.9%
5063878 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.53 45.0 3.18e-01 97.7% 63.0%
5005733 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 46.0 3.67e-01 100.0% 54.4%
3961820 10.20.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.52 43.0 4.02e-01 100.0% 72.7%
4197587 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.52 45.0 3.33e-01 100.0% 44.4%
4994057 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.98e-01 90.8% 87.6%
3254415 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.51 45.0 4.25e-01 100.0% 83.8%
4387316 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.51 45.0 3.27e-01 100.0% 48.1%
3409497 12.2.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C 0.51 43.0 3.56e-01 100.0% 59.4%
4604481 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.50 42.0 3.13e-01 94.3% 75.0%
3786051 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.50 41.0 3.75e-01 100.0% 66.7%