←Back to structures

NC_020849.1__YP_007674280.1__PYDG_00073__00070

Bact-Vir

Identity

Accession:: NC_020849 ↗
Kingdom:: phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Matsuvirus› Pseudoalteromonas_phage_pYD6-A

TaxID: 754052

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-47

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yfvC00	6.10.250.2010	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.76	65.0	5.98e-01	100.0%	76.7%
1f02T00	4.10.820.10	Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain	0.66	52.0	4.52e-01	90.9%	57.6%
2qw5A00	3.20.20.150	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes	0.65	49.0	2.91e-01	81.8%	93.9%
4ifdK02	6.10.250.2660	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.64	44.0	4.80e-01	70.5%	94.1%
3ho6B00	3.40.50.11050	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain	0.63	41.0	2.54e-01	75.0%	11.9%
1pmtA01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.58	39.0	3.15e-01	72.7%	48.9%
4yy8B01	3.30.710.10	Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A	0.54	36.0	3.05e-01	70.5%	75.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3775826	4016.1.1.0 ↗	alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase	0.94	64.0	4.26e-01	70.5%	21.4%
2880851	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.81	52.0	3.60e-01	72.7%	21.8%
3812338	376.1.3.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger	0.79	59.0	4.12e-01	88.6%	26.9%
3188437	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.77	55.0	4.15e-01	84.1%	33.0%
3862747	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.74	58.0	4.66e-01	90.9%	44.7%
3415404	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.74	66.0	3.62e-01	97.7%	8.2%
3787064	7534.1.1.0 ↗	a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase	0.72	67.0	3.92e-01	100.0%	15.7%
5048633	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.72	46.0	3.09e-01	70.5%	18.1%
3366088	2003.1.5.73 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16	0.70	43.0	2.55e-01	84.1%	9.2%
3735923	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.60	46.0	2.57e-01	84.1%	48.2%
4999722	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.59	43.0	3.39e-01	86.4%	36.8%
3440264	109.4.1.198 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12	0.55	44.0	2.81e-01	86.4%	40.0%
3724474	207.1.1.85 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like	0.53	42.0	2.42e-01	90.9%	12.9%

D2 medium residues 52-109

PDB

Domain cluster: representative