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NC_020850.1__YP_007674334.1__VPGG_00025__00025

Bact-Vir

Identity

Accession:: NC_020850 ↗
Kingdom:: phage

Quality

55.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VBM1

TaxID: 754074

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-189

PDB

Domain cluster: rep: JQ066768.1__AFA44858.1__RcapNL_00018__00018__D87-256

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10145.15 best	PhageMin_Tail	34.6	2.60e-08	76.3%	40.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2of7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	33.0	3.31e-01	77.9%	50.7%
2oerA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	34.0	3.10e-01	81.7%	41.3%
1z1vA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.58	32.0	4.01e-01	85.5%	95.7%
1nh1A01	1.10.3290.20	Mainly Alpha › Orthogonal Bundle › Fic-like fold ›	0.53	44.0	3.88e-01	89.3%	98.0%
2h5gB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.53	39.0	3.04e-01	74.8%	68.2%
2genA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	31.0	2.78e-01	80.9%	39.4%
1v9mA02	1.20.1690.10	Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain	0.52	29.0	3.22e-01	97.7%	67.3%
3uoeA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.52	31.0	3.68e-01	87.8%	89.7%
3vprA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	29.0	2.89e-01	71.8%	49.0%
7dfeA01	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.51	34.0	3.45e-01	93.9%	67.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3945172	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.82	75.0	6.28e-01	100.0%	61.0%
3513464	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.80	71.0	7.27e-01	94.7%	98.4%
4030882	159.1.2.6 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail	0.78	72.0	6.08e-01	100.0%	82.4%
3603382	159.1.2.0 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related	0.67	51.0	4.53e-01	100.0%	56.8%
3342177	101.33.1.0 ↗	alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain	0.59	33.0	3.69e-01	71.8%	70.0%
4151921	131.1.1.4 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc	0.58	44.0	2.98e-01	80.2%	68.3%
3715311	5076.1.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier	0.54	45.0	3.75e-01	91.6%	92.5%
4677227	102.1.1.6 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5	0.53	32.0	3.52e-01	88.5%	71.8%
3191134	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.51	37.0	3.29e-01	74.8%	68.7%
3737830	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.51	44.0	3.43e-01	93.9%	96.8%