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NC_020854.1__YP_007675014.1__CPKG_00041__00041

Bact-Vir

NC_020854.1__YP_007675014.1__CPKG_00041__00041

Identity

Accession:
NC_020854 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cyanophage_KBS-S-2A

TaxID: 889953

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-69
PDB
Domain cluster: rep: NC_048756.1__YP_009844620.1__HWC12_gp017__00017__D110-172
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11160.14 best Hva1_TUDOR 35.2 1.50e-08 96.9% 98.3%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.87 58.0 6.49e-01 100.0% 86.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 57.0 5.57e-01 100.0% 63.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 56.0 5.49e-01 100.0% 63.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 56.0 6.27e-01 100.0% 88.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.82 54.0 6.18e-01 100.0% 91.7%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 58.0 6.54e-01 100.0% 94.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 6.43e-01 100.0% 98.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 5.71e-01 100.0% 66.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 55.0 5.95e-01 100.0% 83.9%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 58.0 6.45e-01 100.0% 100.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 6.36e-01 100.0% 94.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 53.0 6.18e-01 96.9% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.92e-01 100.0% 81.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.75 51.0 5.53e-01 100.0% 85.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.60e-01 100.0% 81.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 60.0 5.82e-01 100.0% 79.2%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 58.0 5.33e-01 100.0% 70.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 56.0 5.23e-01 100.0% 69.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.82e-01 100.0% 93.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.56e-01 100.0% 85.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.92e-01 100.0% 75.4%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.72e-01 100.0% 93.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 49.0 5.32e-01 100.0% 98.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.70e-01 100.0% 95.0%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 61.0 4.87e-01 100.0% 80.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.48e-01 100.0% 96.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.05e-01 100.0% 76.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.44e-01 100.0% 98.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.03e-01 100.0% 80.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 46.0 4.63e-01 100.0% 77.3%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.31e-01 100.0% 93.8%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 55.0 5.14e-01 100.0% 80.8%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.60 48.0 4.34e-01 84.6% 88.4%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.86e-01 100.0% 79.2%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 53.0 4.61e-01 96.9% 87.2%
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 45.0 4.13e-01 84.6% 88.2%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.82e-01 89.2% 95.4%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 33.0 3.48e-01 90.8% 69.0%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.86e-01 95.4% 68.9%
3mxnA01 2.40.50.510 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.55e-01 90.8% 61.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.67e-01 96.9% 73.2%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.35e-01 100.0% 62.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.51 34.0 3.58e-01 96.9% 83.3%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.51 36.0 2.75e-01 80.0% 78.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733806 4.1.1.72 ↗ beta barrels › SH3 › SH3 › SH3 › Hva1_TUDOR 0.92 86.0 8.13e-01 100.0% 85.3%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.92 60.0 6.31e-01 100.0% 73.3%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.91 62.0 6.73e-01 100.0% 83.6%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.91 58.0 6.17e-01 100.0% 74.1%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.90 58.0 6.12e-01 100.0% 72.9%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 64.0 6.95e-01 100.0% 87.3%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 59.0 6.07e-01 100.0% 71.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.90 58.0 6.11e-01 100.0% 74.1%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.89 59.0 6.36e-01 100.0% 80.0%
4422251 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.89 56.0 6.30e-01 98.5% 84.0%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 59.0 6.45e-01 100.0% 81.8%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.88 58.0 6.05e-01 100.0% 73.3%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.88 58.0 6.28e-01 100.0% 80.0%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 59.0 5.92e-01 100.0% 69.2%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.88 54.0 4.86e-01 100.0% 48.2%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.88 57.0 4.86e-01 100.0% 44.0%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.87 57.0 5.44e-01 100.0% 58.7%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.87 57.0 5.52e-01 100.0% 62.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 60.0 6.80e-01 100.0% 94.0%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 59.0 6.11e-01 100.0% 76.7%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.86 57.0 5.98e-01 100.0% 75.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.86 56.0 6.38e-01 100.0% 88.0%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 57.0 5.46e-01 100.0% 60.0%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.86 55.0 5.97e-01 100.0% 78.2%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 56.0 2.96e-01 100.0% 2.8%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 55.0 2.99e-01 100.0% 4.3%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 54.0 5.80e-01 100.0% 78.2%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 55.0 3.91e-01 100.0% 25.1%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 55.0 4.99e-01 100.0% 52.9%
4168653 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.82 57.0 6.46e-01 100.0% 94.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.82 59.0 6.33e-01 100.0% 89.1%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 55.0 5.76e-01 100.0% 76.7%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 55.0 6.22e-01 100.0% 92.0%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.80 54.0 5.79e-01 100.0% 81.8%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 55.0 5.78e-01 100.0% 78.3%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.79 62.0 5.13e-01 100.0% 49.1%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.77 58.0 5.56e-01 100.0% 69.9%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.77 57.0 5.44e-01 100.0% 68.0%
3839042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 45.0 5.19e-01 92.3% 84.4%
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.63e-01 100.0% 92.0%
4128902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 5.44e-01 100.0% 90.0%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.73 48.0 5.45e-01 100.0% 93.8%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 47.0 5.07e-01 100.0% 81.8%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.70 51.0 4.73e-01 100.0% 61.2%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.93e-01 100.0% 63.3%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 56.0 5.53e-01 100.0% 84.3%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 61.0 5.78e-01 100.0% 88.0%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 53.0 4.62e-01 100.0% 58.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 54.0 4.73e-01 100.0% 62.1%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.74e-01 100.0% 64.4%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.65 60.0 5.69e-01 100.0% 88.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 53.0 4.75e-01 100.0% 65.6%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.64 53.0 4.88e-01 100.0% 70.6%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 51.0 4.44e-01 100.0% 59.0%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.62 46.0 4.22e-01 100.0% 60.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 57.0 4.96e-01 100.0% 72.6%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.62 52.0 4.72e-01 100.0% 67.8%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 51.0 4.29e-01 100.0% 55.5%
3942998 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.58 45.0 4.50e-01 100.0% 82.9%
4179811 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 30.0 3.44e-01 90.8% 87.5%