NC_020859.1__YP_007675634.1__SWTG_00144__00168

Bact-Vir

Identity

Accession:: NC_020859 ↗
Kingdom:: phage

Quality

62.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Nerrivikvirus› Synechococcus_phage_S-RIM2_R1_1999

TaxID: 869662

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e0rB01	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.70	50.0	3.81e-01	79.2%	46.2%
5n70A02	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.68	53.0	3.65e-01	85.4%	50.3%
1uh9A02	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.65	50.0	3.57e-01	85.4%	50.3%
1v8cA02	3.30.1370.80	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain	0.63	47.0	4.03e-01	81.2%	62.5%
2kjzA01	3.30.720.120	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.62	43.0	4.25e-01	77.1%	72.2%
1onwA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.58	46.0	3.62e-01	91.7%	72.7%
6jkuA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.58	45.0	3.70e-01	91.7%	82.7%
1yrrA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.57	44.0	3.72e-01	91.7%	87.0%
4hh2C04	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.53	37.0	2.91e-01	77.1%	85.5%
4akgA03	3.20.180.20	Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3	0.52	41.0	3.62e-01	95.8%	75.9%
7ccbA01	2.60.120.920	Mainly Beta › Sandwich › Jelly Rolls › SPRY domain	0.50	38.0	2.87e-01	91.7%	48.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4930899	243.6.1.9 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2	0.65	51.0	4.45e-01	91.7%	72.5%
5011464	243.6.1.9 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2	0.63	47.0	3.92e-01	81.2%	74.1%
1866757	6043.2.1.1 ↗	a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain › TagH_C	0.63	44.0	3.46e-01	77.1%	33.9%
4255854	4294.1.1.8 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112	0.62	42.0	4.17e-01	70.8%	76.0%
3589333	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	43.0	3.51e-01	75.0%	98.9%
3973137	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.60	47.0	2.97e-01	87.5%	23.1%
4061009	223.1.1.25 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9	0.53	41.0	3.11e-01	100.0%	61.3%

D2 high residues 80-266

PDB

Domain cluster: rep: hypothetical_protein_OtV5_111c__YP_001648198__Ostreococcus_tauri_virus_OtV5__1785753__DFULL

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01467.33 best	CTP_transf_like	31.8	2.10e-07	88.8%	98.5%

D3 high residues 447-512

PDB

Domain cluster: rep: GU075905.1__ADO99942.1__PHM2_164__00164__D192-260

D4 medium residues 286-352

PDB

Domain cluster: rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00278__D98-161

D5 medium residues 943-1020

PDB