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NC_020860.1__YP_007675712.1__CEPG_00036__00036

Bact-Vir

NC_020860.1__YP_007675712.1__CEPG_00036__00036

Identity

Accession:
NC_020860 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cellulophaga_phage_phiSM

TaxID: 756280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-86
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 52.0 5.23e-01 86.8% 100.0%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.66 55.0 4.76e-01 92.1% 73.9%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 52.0 4.55e-01 90.8% 85.1%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 50.0 4.46e-01 85.5% 94.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 47.0 4.24e-01 82.9% 84.0%
2a0bA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 48.0 4.26e-01 90.8% 61.9%
3kb9A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 51.0 3.41e-01 100.0% 72.1%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 52.0 4.03e-01 100.0% 70.5%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.58 49.0 3.96e-01 100.0% 77.4%
1brwA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.58 52.0 3.53e-01 100.0% 85.3%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.57e-01 89.5% 62.0%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.57 49.0 4.20e-01 97.4% 59.5%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.57 48.0 4.52e-01 92.1% 92.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 40.0 3.77e-01 76.3% 83.2%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 46.0 3.90e-01 100.0% 83.9%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.54 38.0 4.00e-01 78.9% 82.1%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 44.0 3.98e-01 96.1% 74.8%
1x46A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.49e-01 88.2% 89.3%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 3.09e-01 78.9% 82.6%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 39.0 3.23e-01 80.3% 62.0%
2hh6A00 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.51 36.0 3.28e-01 76.3% 55.0%
3dfzA02 1.10.8.610 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like 0.51 35.0 3.56e-01 75.0% 75.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016721 6132.1.1.14 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › PF29261 0.69 46.0 5.09e-01 100.0% 86.7%
3612528 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 57.0 4.39e-01 92.1% 50.6%
5051839 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.68 54.0 5.32e-01 85.5% 100.0%
4944283 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 55.0 4.52e-01 93.4% 75.0%
4948638 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.64 52.0 5.07e-01 90.8% 95.2%
4943804 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.64 53.0 4.85e-01 89.5% 73.7%
3505789 631.1.1.1 ↗ alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.64 56.0 4.16e-01 100.0% 93.5%
4497602 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.63 53.0 4.65e-01 93.4% 69.6%
4037098 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.62 50.0 4.49e-01 92.1% 77.3%
3950589 601.18.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › DUF4395 0.60 52.0 4.79e-01 97.4% 88.0%
4975992 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 48.0 4.51e-01 88.2% 76.8%
5051840 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.60 48.0 4.66e-01 90.8% 85.9%
3213609 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 45.0 4.48e-01 82.9% 91.0%
168332 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.59 52.0 4.03e-01 100.0% 70.5%
3422458 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.57 43.0 4.44e-01 81.6% 100.0%
119326 3073.1.1.1 ↗ alpha arrays › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › ORF12 from Lactococcus lactis phage p2 › Phage_p2_ORF12 0.57 48.0 4.52e-01 92.1% 92.3%
3903825 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.55 43.0 4.15e-01 81.6% 83.5%
4314104 601.3.1.10 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF30376 0.55 44.0 3.53e-01 93.4% 44.7%
3776363 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.55 42.0 3.11e-01 85.5% 33.5%
3690869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.86e-01 85.5% 67.4%
3882485 109.4.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.53 39.0 2.95e-01 78.9% 62.5%
3926197 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 39.0 3.53e-01 81.6% 62.7%
4575406 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.52 45.0 3.33e-01 100.0% 67.0%
3663320 4009.1.1.15 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › MOM1 0.52 39.0 3.73e-01 82.9% 90.0%