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NC_020860.1__YP_007675729.1__CEPG_00053__00053

Bact-Vir

NC_020860.1__YP_007675729.1__CEPG_00053__00053

Identity

Accession:
NC_020860 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cellulophaga_phage_phiSM

TaxID: 756280

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-234
PDB
Domain cluster: rep: IMGVR_UViG_3300000154_000022-3300000154-SI47jul10_150mDRAFT_100054520__D5-242
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iq8A01 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.85 82.0 6.95e-01 100.0% 82.3%
7ui4A01 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.79 74.0 6.94e-01 97.4% 100.0%
1xi3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.75 61.0 6.59e-01 97.9% 97.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 70.0 6.54e-01 99.1% 93.1%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 65.0 5.91e-01 93.6% 99.0%
1f6kC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 65.0 6.01e-01 93.1% 98.2%
1y0eA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 59.0 6.11e-01 85.8% 97.3%
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 66.0 6.03e-01 98.7% 76.6%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 61.0 5.90e-01 96.1% 79.9%
3eb2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 6.05e-01 99.1% 77.4%
3inpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 63.0 6.53e-01 98.7% 99.1%
5axgA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.71 67.0 5.83e-01 100.0% 97.9%
4ov4A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 6.20e-01 98.7% 91.4%
4xkyA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 65.0 5.91e-01 98.7% 75.2%
3qfeB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 63.0 5.73e-01 98.7% 72.5%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 66.0 5.14e-01 100.0% 83.8%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 61.0 5.85e-01 96.6% 81.1%
3hpxA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 65.0 5.96e-01 98.7% 89.3%
1mehA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 66.0 5.64e-01 100.0% 81.6%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 65.0 5.90e-01 99.1% 76.2%
2r8wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 64.0 5.88e-01 98.7% 76.1%
3i4kA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 62.0 6.03e-01 97.0% 85.7%
4s3jB02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.69 64.0 6.06e-01 97.9% 96.0%
3cu2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 63.0 6.33e-01 97.0% 94.9%
1y65A00 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.69 63.0 5.59e-01 97.9% 87.6%
1g5aA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 64.0 5.35e-01 100.0% 99.5%
3bleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 64.0 5.81e-01 99.6% 81.8%
2b81C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.68 63.0 5.61e-01 97.4% 93.4%
3i6eA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.68 61.0 5.91e-01 97.9% 85.8%
3ebvA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 63.0 5.84e-01 99.1% 98.6%
3tevB00 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.68 64.0 5.71e-01 100.0% 90.1%
3qz6A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.67 58.0 5.64e-01 90.6% 90.3%
1ct5A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.66 53.0 5.44e-01 91.0% 85.5%
1k70A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 61.0 5.57e-01 99.1% 97.1%
1vd6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.65 54.0 5.58e-01 97.9% 92.7%
1e40A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 59.0 4.89e-01 97.4% 90.4%
3kw3A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.64 53.0 5.54e-01 93.6% 93.9%
1e43A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 60.0 5.51e-01 99.1% 99.0%
2y8vA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 59.0 5.65e-01 98.7% 93.9%
7mpyA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.62 59.0 5.83e-01 100.0% 96.3%
3bc9A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 57.0 5.26e-01 99.1% 98.0%
4aeeA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 56.0 5.03e-01 99.6% 97.2%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.61 51.0 5.18e-01 87.1% 92.0%
3a24A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 55.0 5.27e-01 99.1% 94.9%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.59 52.0 5.05e-01 92.7% 92.9%
2vhhA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.57 52.0 4.55e-01 97.4% 80.0%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.57 49.0 4.88e-01 92.7% 91.5%
4ac9C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 36.0 3.98e-01 85.8% 79.2%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 33.0 3.84e-01 71.7% 80.4%
3jy6D02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 33.0 4.19e-01 96.1% 100.0%
7uvpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 4.08e-01 90.1% 70.9%
3uboB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 46.0 4.14e-01 94.0% 98.8%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.52 35.0 4.03e-01 95.3% 93.3%
3fwyA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 4.54e-01 100.0% 92.2%
4xymC03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.52 32.0 3.76e-01 79.0% 85.8%
2r6fA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 4.20e-01 97.0% 95.8%
2pzmB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 41.0 3.78e-01 86.7% 99.7%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 28.0 3.17e-01 76.8% 69.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995886 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.86 83.0 7.05e-01 100.0% 84.9%
5054827 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.86 83.0 7.01e-01 100.0% 83.4%
4946342 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.86 82.0 6.68e-01 100.0% 81.0%
4948239 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.85 82.0 6.93e-01 100.0% 82.8%
4945925 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.85 81.0 6.76e-01 100.0% 80.0%
4968912 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.85 81.0 6.79e-01 100.0% 78.9%
4979409 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.85 81.0 6.93e-01 100.0% 82.9%
4995745 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.83 81.0 7.04e-01 100.0% 97.2%
4050311 2002.1.1.37 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.75 65.0 6.76e-01 99.1% 96.3%
5004196 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 62.0 6.02e-01 86.7% 91.0%
4485059 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.72 64.0 6.11e-01 100.0% 81.5%
4264332 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.71 63.0 6.10e-01 99.6% 83.1%
1519239 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.71 65.0 5.94e-01 98.7% 74.7%
3987846 2002.1.1.50 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.71 66.0 6.09e-01 99.1% 93.2%
4051019 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.70 59.0 5.76e-01 97.4% 80.0%
None — 0.70 67.0 5.58e-01 100.0% 80.3%
5078005 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.70 65.0 6.19e-01 98.3% 99.3%
3698490 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.70 61.0 5.52e-01 90.6% 86.5%
5047328 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.70 65.0 5.69e-01 97.9% 99.7%
4102059 2002.1.1.37 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.70 64.0 6.39e-01 98.3% 95.3%
4973176 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.69 65.0 6.01e-01 100.0% 99.3%
1096357 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.69 60.0 5.76e-01 90.6% 91.9%
3972385 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 61.0 5.27e-01 99.1% 83.1%
4970977 2002.1.1.44 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase 0.66 60.0 5.93e-01 99.1% 94.8%
1289504 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.66 50.0 4.92e-01 87.6% 73.7%
3976841 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.64 59.0 4.84e-01 97.4% 89.4%
2163579 2002.1.1.161 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_97 0.64 60.0 5.67e-01 100.0% 95.6%
4665730 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 59.0 5.34e-01 97.9% 81.6%
3386982 2004.1.1.343 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.63 28.0 3.70e-01 97.9% 75.8%
198625 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.63 58.0 4.85e-01 99.1% 97.2%
4486360 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 55.0 5.35e-01 98.3% 86.4%
4487126 2002.1.1.161 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_97 0.62 54.0 5.21e-01 97.9% 81.5%
4974967 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 50.0 4.86e-01 84.5% 95.3%
9010 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.61 56.0 5.46e-01 97.4% 94.9%
3217236 2007.9.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › MAP3K_TRAF_bd+DRHyd-ASK 0.61 33.0 3.75e-01 90.6% 66.7%
4945240 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.61 53.0 5.01e-01 96.6% 77.1%
5072313 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 48.0 4.63e-01 83.7% 95.6%
4963321 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.60 56.0 5.35e-01 100.0% 92.8%
5050557 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 47.0 4.56e-01 83.7% 93.2%
5031548 2002.3.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.59 49.0 4.75e-01 88.4% 84.2%
3983390 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.59 51.0 4.85e-01 92.7% 83.3%
4334754 2002.3.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.57 52.0 4.75e-01 99.1% 78.1%
4948121 7592.1.1.0 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.56 29.0 3.79e-01 77.7% 88.0%
3284200 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 43.0 3.86e-01 80.7% 98.8%
4984215 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 42.0 3.75e-01 78.1% 95.1%
4944780 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 4.47e-01 86.3% 87.0%
3602840 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.53 43.0 4.49e-01 98.3% 91.3%
3603315 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.53 43.0 4.46e-01 96.6% 91.2%
3627662 2007.15.1.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK 0.53 34.0 3.77e-01 79.4% 80.0%
4244555 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 48.0 4.32e-01 100.0% 75.6%
3408662 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 44.0 4.01e-01 92.3% 96.5%
3317914 2007.25.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 › Ribosomal_L1 0.51 23.0 3.41e-01 87.1% 100.0%
3311663 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 44.0 3.92e-01 94.8% 99.1%
3232001 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.51 46.0 3.63e-01 98.7% 67.8%
5020880 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.50 45.0 4.40e-01 97.0% 92.5%
5042722 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.50 44.0 4.44e-01 97.4% 94.0%