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NC_020863.1__YP_007675937.1__VPIG_00077__00077
Bact-VirNC_020863.1__YP_007675937.1__VPIG_00077__00077
Identity
- Accession:
- NC_020863 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-80
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 62.0 | 4.54e-01 | 76.3% | 31.0% |
| 3htmA02 | 6.10.250.3030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.82 | 49.0 | 5.83e-01 | 76.3% | 90.0% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.80 | 56.0 | 5.18e-01 | 74.6% | 60.5% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.78 | 53.0 | 4.52e-01 | 71.2% | 51.1% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 56.0 | 5.60e-01 | 76.3% | 76.7% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.76 | 55.0 | 5.04e-01 | 76.3% | 63.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 60.0 | 5.17e-01 | 86.4% | 92.4% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 54.0 | 5.49e-01 | 76.3% | 78.0% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.73 | 55.0 | 4.38e-01 | 81.4% | 43.7% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.73 | 57.0 | 4.54e-01 | 89.8% | 43.1% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.73 | 52.0 | 3.88e-01 | 76.3% | 32.2% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 50.0 | 4.60e-01 | 76.3% | 69.2% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 63.0 | 4.65e-01 | 100.0% | 64.2% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.69 | 47.0 | 4.80e-01 | 71.2% | 76.8% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 61.0 | 4.41e-01 | 100.0% | 59.7% |
| 2cfuA02 | 1.25.40.880 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain | 0.67 | 55.0 | 4.08e-01 | 88.1% | 36.9% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 60.0 | 4.35e-01 | 100.0% | 65.2% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 59.0 | 4.33e-01 | 100.0% | 61.5% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.66 | 45.0 | 3.89e-01 | 71.2% | 46.7% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.65 | 49.0 | 4.03e-01 | 79.7% | 84.5% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.65 | 49.0 | 4.82e-01 | 81.4% | 81.2% |
| 3rvyA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 56.0 | 4.66e-01 | 100.0% | 70.1% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 5.00e-01 | 79.7% | 100.0% |
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.62 | 49.0 | 4.00e-01 | 93.2% | 44.3% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 47.0 | 4.59e-01 | 81.4% | 75.0% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 49.0 | 4.30e-01 | 88.1% | 60.2% |
| 1g7dA00 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.61 | 47.0 | 4.02e-01 | 88.1% | 54.7% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 3.76e-01 | 89.8% | 92.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060145 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.87 | 58.0 | 5.62e-01 | 71.2% | 63.1% |
| None | — | 0.83 | 59.0 | 3.39e-01 | 74.6% | 9.3% | |
| 5061318 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.80 | 54.0 | 5.22e-01 | 71.2% | 63.1% |
| 4982047 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.80 | 54.0 | 5.13e-01 | 71.2% | 61.4% |
| 5068969 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 54.0 | 5.11e-01 | 71.2% | 60.0% |
| 3821338 | 226.1.1.5 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ | 0.78 | 60.0 | 4.64e-01 | 89.8% | 39.2% |
| 3662101 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.77 | 62.0 | 5.77e-01 | 88.1% | 78.7% |
| 3864403 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.75 | 48.0 | 3.53e-01 | 86.4% | 25.2% |
| 3547743 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.74 | 49.0 | 3.51e-01 | 84.7% | 25.0% |
| 3415759 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.72 | 65.0 | 5.70e-01 | 98.3% | 90.6% |
| 3825757 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.72 | 58.0 | 5.70e-01 | 91.5% | 93.8% |
| 4646206 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.71 | 63.0 | 4.95e-01 | 94.9% | 65.2% |
| 4036079 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.70 | 64.0 | 4.74e-01 | 100.0% | 71.7% |
| 4630964 | 610.1.1.1 ↗ | alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 | 0.70 | 59.0 | 5.45e-01 | 93.2% | 80.0% |
| 3870171 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.69 | 57.0 | 5.37e-01 | 96.6% | 74.3% |
| 3292409 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.69 | 55.0 | 5.50e-01 | 88.1% | 98.3% |
| 1405082 | 4.21.1.1 ↗ | beta barrels › SH3 › ImpE-like › ImpE-like › ImpE | 0.68 | 46.0 | 3.29e-01 | 71.2% | 95.3% |
| 4094359 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.67 | 52.0 | 5.52e-01 | 86.4% | 100.0% |
| 3942830 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.66 | 53.0 | 4.55e-01 | 91.5% | 100.0% |
| 3344626 | 5.1.4.255 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD | 0.63 | 56.0 | 3.27e-01 | 96.6% | 90.8% |
| 3813373 | 109.4.1.1331 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif | 0.60 | 49.0 | 2.88e-01 | 96.6% | 14.4% |
| 3568856 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.55 | 37.0 | 3.32e-01 | 71.2% | 97.8% |