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NC_020865.1__YP_007676327.1__CYZG_00005__00005

Bact-Vir

Identity

Accession:: NC_020865 ↗
Kingdom:: phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Sednavirus› Cyanophage_KBS-P-1A

TaxID: 889951

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 285-357

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7vyuA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.56	40.0	3.21e-01	76.7%	67.3%

D2 medium residues 655-726_755-802

PDB

Domain cluster: representative

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.70	41.0	4.82e-01	94.2%	83.1%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.64	44.0	4.50e-01	95.0%	72.0%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.64	30.0	3.06e-01	95.0%	44.8%
1t72A02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.63	44.0	4.80e-01	95.0%	86.7%
4x5mA00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.63	37.0	4.28e-01	94.2%	80.2%
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	47.0	4.04e-01	95.8%	49.5%
2qupA00	1.20.120.490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain	0.62	33.0	3.32e-01	75.8%	51.3%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.60	43.0	4.51e-01	98.3%	81.7%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.60	33.0	3.97e-01	95.0%	82.7%
1vmgA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.59	32.0	3.74e-01	90.0%	75.6%
2i0mA02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.59	40.0	4.33e-01	95.8%	83.2%
3ck6C02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.58	43.0	4.36e-01	95.8%	77.3%
3kavA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.58	34.0	3.60e-01	95.8%	65.7%
5jajA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.57	33.0	3.37e-01	92.5%	58.6%
4yjwA00	1.20.120.930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829	0.56	37.0	3.49e-01	96.7%	52.9%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.56	34.0	3.52e-01	95.8%	62.1%
3l1nA02	1.20.1280.140	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.55	38.0	4.33e-01	100.0%	98.9%
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	30.0	3.13e-01	76.7%	58.3%
1h7cA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	38.0	4.09e-01	87.5%	89.3%
4cqiA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	40.0	4.18e-01	93.3%	90.7%
1i4dA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.52	36.0	3.10e-01	70.8%	69.7%
2m6bA00	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.51	32.0	3.06e-01	95.8%	50.7%
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.50	30.0	3.56e-01	82.5%	85.9%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3870489	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.60	31.0	3.03e-01	75.8%	44.4%
3378097	604.1.1.110 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N	0.60	48.0	4.82e-01	95.8%	83.3%
3491873	4006.1.1.0 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain	0.59	32.0	3.57e-01	77.5%	66.3%
3403179	604.7.1.1 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA	0.54	41.0	4.39e-01	94.2%	94.3%
3580347	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	39.0	4.09e-01	99.2%	86.7%
3799907	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.53	39.0	3.80e-01	99.2%	70.0%
3980912	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.53	32.0	3.31e-01	95.0%	61.7%
3281911	601.4.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › NIT	0.53	32.0	3.30e-01	95.8%	60.8%
4529282	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.52	30.0	3.46e-01	75.8%	76.7%
3659069	604.7.1.1 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA	0.52	44.0	4.44e-01	95.0%	91.7%
3346499	109.4.1.46 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N	0.52	36.0	3.52e-01	99.2%	64.4%
3980942	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.51	34.0	3.67e-01	88.3%	80.0%
3201166	604.7.1.0 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A	0.51	43.0	4.14e-01	95.8%	81.5%

D3 medium residues 727-754_803-885_956-968

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jd9G00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.74	40.0	4.06e-01	71.0%	53.3%
2z4sA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.64	29.0	3.65e-01	73.4%	69.4%
2be4A02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.59	29.0	3.23e-01	72.6%	55.4%
4zvaA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.56	39.0	3.66e-01	71.0%	77.9%
4me9B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	38.0	3.33e-01	74.2%	54.8%
1kxpD02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.53	29.0	3.28e-01	82.3%	69.3%
2honA02	1.20.1250.30	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	36.0	3.50e-01	71.8%	91.1%
2f3oA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.52	44.0	2.68e-01	90.3%	18.8%
1l1lA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.52	44.0	2.96e-01	94.4%	65.4%
2cvzA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.51	36.0	3.55e-01	71.8%	95.5%
2wdqC00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.51	38.0	3.85e-01	76.6%	81.8%
6f7hA00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.50	43.0	3.50e-01	96.0%	90.8%
3u1nB01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.50	45.0	3.33e-01	99.2%	69.5%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4407611	3896.1.2.1 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase › CarS-like	0.64	50.0	4.41e-01	87.1%	56.7%
3500510	3542.1.1.1 ↗	alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin	0.62	43.0	3.36e-01	79.0%	32.5%
4989627	148.1.3.19 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3	0.61	45.0	4.45e-01	75.8%	73.8%
3987298	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.61	45.0	3.04e-01	76.6%	47.4%
4945009	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.60	43.0	3.80e-01	84.7%	50.6%
4252058	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.60	46.0	3.10e-01	79.0%	49.3%
3832631	5054.1.1.140 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › DUF7813	0.60	49.0	3.92e-01	87.9%	62.8%
4506168	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.58	43.0	4.31e-01	78.2%	75.2%
3736764	3711.1.1.0 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein	0.58	44.0	3.86e-01	79.0%	54.4%
3990268	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.57	45.0	3.79e-01	84.7%	70.2%
3889043	5052.1.1.1 ↗	alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF	0.57	44.0	3.56e-01	81.5%	69.4%
5029389	601.17.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen	0.56	39.0	3.74e-01	71.8%	95.2%
4020387	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.56	46.0	3.08e-01	85.5%	97.4%
3564395	5031.1.1.4 ↗	extended segments › Photosystem II reaction center protein J, PsbJ › Photosystem II reaction center protein J, PsbJ › Photosystem II reaction center protein J, PsbJ › Yip1	0.56	44.0	3.74e-01	83.9%	78.0%
5007010	1075.1.1.3 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2	0.53	45.0	3.68e-01	97.6%	87.6%
3563442	101.1.2.352 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5	0.52	31.0	3.83e-01	76.6%	96.0%
3924649	219.1.1.15 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU	0.51	40.0	3.00e-01	83.9%	61.8%
3587847	5076.2.1.4 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › GPDPase_memb	0.51	44.0	4.07e-01	93.5%	80.6%
3689348	5048.1.1.1 ↗	alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP	0.51	44.0	3.44e-01	96.0%	82.4%
4341991	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.50	45.0	2.76e-01	100.0%	31.9%
3783792	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.50	44.0	3.42e-01	100.0%	69.0%
4020914	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	40.0	3.47e-01	87.1%	91.5%
4995064	613.1.1.1 ↗	alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c	0.50	38.0	3.06e-01	91.1%	42.2%

D4 medium residues 969-1071_1150-1188

PDB

Domain cluster: rep: GU071102.1__ADP00138.1__CYIG_00065__00062__D1160-1251_1340-1384

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4088337	230.3.1.1 ↗	a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS	0.54	28.0	3.41e-01	73.2%	78.8%
3200171	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.50	38.0	4.01e-01	97.2%	87.7%

D5 medium residues 1072-1149

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7dfeA01	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.60	42.0	3.63e-01	74.4%	93.7%
4cs9B02	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.57	35.0	3.23e-01	97.4%	44.9%
2z1dA01	3.40.50.11750	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1	0.55	43.0	3.61e-01	85.9%	93.6%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.53	36.0	3.85e-01	76.9%	83.1%
4zbwA02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	36.0	3.56e-01	74.4%	80.5%
3axjB02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.51	33.0	3.24e-01	83.3%	61.2%
1hqmC01	2.40.270.10	Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6	0.50	37.0	2.78e-01	80.8%	35.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3858475	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.51	39.0	3.26e-01	85.9%	55.2%