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NC_020866.1__YP_007676414.1__RHVG_00035__00035
Bact-VirNC_020866.1__YP_007676414.1__RHVG_00035__00035
Identity
- Accession:
- NC_020866 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 244-421
Domain cluster:
rep: MH809533.1__AYJ74340.1__phiE058_004__00004__D579-730
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 33.0 | 3.83e-01 | 80.3% | 72.7% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.57 | 40.0 | 4.41e-01 | 94.4% | 88.8% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 33.0 | 3.78e-01 | 91.6% | 77.3% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 34.0 | 4.06e-01 | 89.9% | 91.7% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 32.0 | 3.91e-01 | 91.6% | 93.6% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 34.0 | 4.00e-01 | 91.6% | 92.5% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 33.0 | 3.93e-01 | 89.3% | 91.7% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 30.0 | 3.70e-01 | 91.0% | 89.3% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.51 | 27.0 | 3.23e-01 | 98.3% | 75.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037626 | 5.1.10.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 | 0.78 | 25.0 | 3.64e-01 | 88.2% | 61.2% |
| 3839094 | 234.3.1.6 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 | 0.70 | 63.0 | 6.35e-01 | 100.0% | 93.9% |
| 3941306 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.62 | 36.0 | 2.84e-01 | 94.4% | 28.9% |
| 4972327 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.62 | 34.0 | 4.51e-01 | 91.0% | 98.9% |
| 3174935 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 36.0 | 2.80e-01 | 96.1% | 27.4% |
| 3222814 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 28.0 | 3.94e-01 | 91.0% | 97.5% |
| 3742859 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.57 | 22.0 | 3.59e-01 | 100.0% | 100.0% |
| 3629780 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 36.0 | 2.84e-01 | 96.1% | 31.1% |
| 3630412 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 34.0 | 2.65e-01 | 96.1% | 27.3% |
| 3240616 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 37.0 | 2.91e-01 | 93.8% | 33.2% |
| 4104753 | 243.1.1.92 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 | 0.55 | 35.0 | 3.92e-01 | 91.6% | 81.5% |
| 3198523 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.54 | 37.0 | 2.83e-01 | 94.4% | 30.3% |
| 3698170 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.52 | 37.0 | 2.88e-01 | 94.4% | 32.8% |
| 3928508 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 35.0 | 2.73e-01 | 94.4% | 33.2% |
| 3736971 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.52 | 37.0 | 2.87e-01 | 94.4% | 33.5% |
| 3457581 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.51 | 35.0 | 2.80e-01 | 94.4% | 33.6% |
| 3323226 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 33.0 | 3.59e-01 | 92.1% | 76.7% |
D2
medium
residues 1-129_227-242
Domain cluster:
rep: OQ059336.1__WBF05284.1__X__00022__D13-109
D3
medium
residues 130-226
Domain cluster:
rep: MT732475.1__QQV91569.1__Peternella1_33__00033__D134-206
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04233.20 best | Phage_Mu_F | 31.6 | 3.40e-07 | 51.5% | 41.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3735604 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.53 | 39.0 | 2.36e-01 | 78.4% | 45.1% |
| 5001240 | 2007.1.2.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp | 0.52 | 39.0 | 2.89e-01 | 81.4% | 45.5% |