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NC_020866.1__YP_007676434.1__RHVG_00055__00055
Bact-VirNC_020866.1__YP_007676434.1__RHVG_00055__00055
Identity
- Accession:
- NC_020866 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-109
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 45.0 | 3.57e-01 | 74.2% | 73.1% |
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 44.0 | 3.50e-01 | 76.3% | 71.7% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 38.0 | 3.44e-01 | 71.0% | 50.0% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 43.0 | 3.49e-01 | 80.6% | 93.0% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 39.0 | 3.86e-01 | 73.1% | 71.0% |
| 4owpB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 40.0 | 3.38e-01 | 79.6% | 50.0% |
| 1peaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 42.0 | 3.42e-01 | 82.8% | 88.6% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 42.0 | 3.41e-01 | 81.7% | 91.2% |
| 1zj8A03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.53 | 38.0 | 3.26e-01 | 77.4% | 45.5% |
| 3hutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 36.0 | 3.18e-01 | 76.3% | 68.7% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 3.17e-01 | 90.3% | 79.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999516 | 1.1.9.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE | 0.61 | 42.0 | 3.72e-01 | 71.0% | 72.6% |
| 4978876 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 39.0 | 3.39e-01 | 76.3% | 57.5% |
| 4639069 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.55 | 46.0 | 3.66e-01 | 94.6% | 97.5% |
| None | — | 0.55 | 42.0 | 3.62e-01 | 84.9% | 85.0% | |
| 3512674 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 35.0 | 3.15e-01 | 71.0% | 45.9% |
| 5055404 | 2007.1.14.36 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › PF27735 | 0.53 | 38.0 | 3.14e-01 | 76.3% | 71.4% |
| 4988863 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.52 | 38.0 | 3.07e-01 | 76.3% | 62.6% |
| 3285859 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.52 | 39.0 | 3.57e-01 | 82.8% | 77.8% |
| 3638371 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.00e-01 | 83.9% | 79.5% |
| 3882636 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.51 | 38.0 | 3.46e-01 | 87.1% | 57.7% |
| 3472650 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 38.0 | 3.47e-01 | 81.7% | 65.4% |
D2
high
residues 328-476
Domain cluster:
rep: NC_001902__NP_046981.1__psiM2p27__00027__D58-215
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gr7A00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.71 | 32.0 | 3.91e-01 | 74.5% | 63.4% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 63.0 | 5.32e-01 | 100.0% | 97.9% |
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 43.0 | 4.74e-01 | 99.3% | 79.3% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.67 | 46.0 | 5.05e-01 | 96.6% | 86.1% |
| 2x8kA03 | 2.60.120.860 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 46.0 | 5.27e-01 | 100.0% | 99.1% |
| 4hfsA00 | 2.60.120.1270 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 55.0 | 4.97e-01 | 93.3% | 82.8% |
| 5nldB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 54.0 | 5.66e-01 | 93.3% | 98.6% |
| 4ym3C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 55.0 | 5.73e-01 | 96.0% | 100.0% |
| 1hlcA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 5.52e-01 | 91.9% | 100.0% |
| 1s2kA00 | 2.60.120.700 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 | 0.62 | 53.0 | 4.80e-01 | 92.6% | 78.9% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 42.0 | 4.55e-01 | 70.5% | 100.0% |
| 3rd7A00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.60 | 46.0 | 3.77e-01 | 81.2% | 53.5% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 43.0 | 4.86e-01 | 78.5% | 97.4% |
| 1mveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.36e-01 | 94.0% | 67.4% |
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 41.0 | 3.48e-01 | 70.5% | 100.0% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 45.0 | 4.67e-01 | 81.2% | 91.6% |
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 43.0 | 4.68e-01 | 76.5% | 98.4% |
| 5mc9A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 4.78e-01 | 96.6% | 87.9% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 4.48e-01 | 77.2% | 92.2% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 49.0 | 4.29e-01 | 93.3% | 85.3% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 41.0 | 3.54e-01 | 74.5% | 61.4% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 39.0 | 3.33e-01 | 70.5% | 99.6% |
| 2uvaG08 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 45.0 | 3.58e-01 | 85.9% | 60.8% |
| 4oocA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.55 | 44.0 | 3.60e-01 | 83.2% | 51.5% |
| 5fuiA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 43.0 | 4.64e-01 | 100.0% | 100.0% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 42.0 | 4.59e-01 | 82.6% | 100.0% |
| 2oiwA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 43.0 | 4.52e-01 | 83.2% | 95.5% |
| 2bbaA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 49.0 | 4.60e-01 | 100.0% | 95.7% |
| 8a28A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 4.88e-01 | 100.0% | 100.0% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 45.0 | 3.73e-01 | 91.3% | 73.5% |
| 1z54A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 4.48e-01 | 83.2% | 97.7% |
| 3cjyA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.53 | 43.0 | 3.55e-01 | 83.9% | 71.9% |
| 2cyeC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 4.42e-01 | 83.2% | 95.5% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 4.56e-01 | 100.0% | 99.2% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 43.0 | 4.58e-01 | 99.3% | 99.2% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 39.0 | 3.21e-01 | 78.5% | 95.5% |
| 6x1kA01 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 38.0 | 4.26e-01 | 85.2% | 100.0% |
| 4d8mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 43.0 | 4.12e-01 | 100.0% | 78.8% |
| 2ownA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 39.0 | 3.32e-01 | 83.2% | 52.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005599 | 10.1.2.201 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PF27237 | 0.70 | 42.0 | 5.30e-01 | 92.6% | 98.9% |
| 4202051 | 10.32.1.271 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27237 | 0.70 | 42.0 | 5.30e-01 | 92.6% | 98.9% |
| 3997948 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.64 | 59.0 | 5.91e-01 | 100.0% | 96.1% |
| 3296624 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 47.0 | 4.60e-01 | 100.0% | 70.6% |
| 4010676 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.60 | 36.0 | 2.60e-01 | 82.6% | 22.0% |
| 3300921 | 207.1.1.190 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_13 | 0.59 | 49.0 | 3.42e-01 | 99.3% | 27.2% |
| 3282454 | 222.1.1.24 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA | 0.59 | 44.0 | 4.52e-01 | 77.2% | 89.0% |
| 3522661 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.59 | 45.0 | 4.75e-01 | 100.0% | 87.4% |
| 3385720 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 47.0 | 4.78e-01 | 83.2% | 89.0% |
| 4508396 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.58 | 45.0 | 4.40e-01 | 81.9% | 83.6% |
| 169280 | 222.1.1.23 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeI-like | 0.58 | 43.0 | 4.68e-01 | 76.5% | 98.4% |
| 4975805 | 2499.1.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like | 0.57 | 48.0 | 3.32e-01 | 98.7% | 26.3% |
| 4065994 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.56 | 43.0 | 4.38e-01 | 80.5% | 90.7% |
| 4471331 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.55 | 41.0 | 4.23e-01 | 77.9% | 82.8% |
| 5027267 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 48.0 | 4.87e-01 | 100.0% | 94.7% |
| 4047090 | 222.1.1.24 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA | 0.54 | 41.0 | 4.24e-01 | 78.5% | 90.7% |
| 3477921 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 50.0 | 4.99e-01 | 100.0% | 97.4% |
| 3289852 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 38.0 | 3.53e-01 | 75.8% | 88.1% |
| 5035188 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 39.0 | 4.34e-01 | 89.3% | 100.0% |
| 3303563 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.51 | 36.0 | 3.61e-01 | 73.8% | 81.9% |
| 4936151 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 36.0 | 3.57e-01 | 72.5% | 87.5% |
| 3700354 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 36.0 | 3.36e-01 | 74.5% | 87.5% |
| 3820010 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.50 | 36.0 | 3.59e-01 | 74.5% | 81.9% |
D3
medium
residues 116-187
Domain cluster:
representative
D4
medium
residues 188-258
Domain cluster:
rep: KR153873.1__AKG94469.1__X__00006__D261-317
D5
medium
residues 259-313
Domain cluster:
representative