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NC_020868.1__YP_007676592.1__VPMG_00102__00102

Bact-Vir

Identity

Accession:: NC_020868 ↗
Kingdom:: phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Stoningtonvirus› Vibrio_phage_VBP32

TaxID: 754072

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-102

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fx0B01	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.63	29.0	3.24e-01	93.8%	53.2%
5zwzA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.58	27.0	3.14e-01	93.8%	61.4%
1wapA00	2.60.40.50	Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like	0.56	27.0	3.16e-01	75.3%	60.3%
3ftbA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.53	38.0	3.66e-01	74.2%	81.2%
2il5A00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.53	37.0	3.20e-01	73.2%	95.1%
5ujeA01	3.30.1760.10	Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2	0.52	38.0	3.69e-01	78.4%	70.3%
4lduA03	2.30.30.1040	Mainly Beta › Roll › SH3 type barrels. ›	0.51	29.0	3.33e-01	93.8%	76.5%
4dolA01	3.50.70.10	Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase ›	0.51	37.0	3.22e-01	76.3%	95.5%
4i1sB00	4.10.80.340	Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 ›	0.51	28.0	3.58e-01	90.7%	98.1%
4lvnP00	3.30.70.2380	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	32.0	3.47e-01	80.4%	76.5%
1regX00	3.30.70.650	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation repressor RegA	0.50	40.0	3.76e-01	86.6%	74.6%
2ar1A00	3.10.590.10	Alpha Beta › Roll › ph1033 like fold › ph1033 like domains	0.50	41.0	3.54e-01	90.7%	63.1%
2e6mA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.50	37.0	3.06e-01	79.4%	78.0%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4996595	5103.1.1.0 ↗	a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380	0.65	48.0	4.66e-01	78.4%	87.3%
4382401	1.1.7.100 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N	0.61	32.0	3.46e-01	100.0%	57.6%
3982237	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.61	30.0	3.24e-01	91.8%	52.9%
3449742	4.25.1.0 ↗	beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain	0.59	31.0	3.62e-01	92.8%	73.8%
3614175	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.57	27.0	2.58e-01	93.8%	38.2%
4809346	1.1.13.57 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637	0.57	30.0	3.25e-01	91.8%	59.3%
3591670	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	26.0	3.26e-01	89.7%	70.9%
4996590	821.1.1.4 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123	0.55	45.0	3.96e-01	91.8%	98.1%
4976925	821.1.1.4 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123	0.55	45.0	3.95e-01	93.8%	96.7%
3739290	304.107.1.7 ↗	a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD	0.51	42.0	3.17e-01	97.9%	83.4%