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NC_020873.1__YP_007676927.1__K201_gp029__00029

Bact-Vir

NC_020873.1__YP_007676927.1__K201_gp029__00029

Identity

Accession:
NC_020873 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-89
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11195.15 best Tad2-like 47.5 3.00e-12 100.0% 95.9%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 40.0 3.37e-01 78.0% 95.1%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.54 41.0 4.41e-01 81.7% 95.7%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.66e-01 82.9% 92.2%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.32e-01 98.8% 98.5%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 36.0 3.77e-01 84.1% 80.6%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 44.0 3.02e-01 98.8% 94.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588096 4.1.1.189 beta barrels › SH3 › SH3 › SH3 › DUF2829 0.86 69.0 7.34e-01 100.0% 95.9%
3505182 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 35.0 3.61e-01 72.0% 52.5%
3629462 5090.1.1.8 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.56 49.0 3.39e-01 100.0% 91.3%
3937045 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 42.0 3.87e-01 81.7% 100.0%
3837874 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.55 38.0 2.37e-01 74.4% 12.9%
3791091 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.53 40.0 2.53e-01 81.7% 29.6%
3781121 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.81e-01 89.0% 73.4%
3878529 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.51 35.0 3.21e-01 78.0% 53.6%