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NC_020874.1__YP_007677183.1__PRSG_00050__00047
Bact-VirNC_020874.1__YP_007677183.1__PRSG_00050__00047
Identity
- Accession:
- NC_020874 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Tritonvirus›
Prochlorococcus_phage_P-SSP3
TaxID: 382273
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.80 | 54.0 | 4.08e-01 | 70.4% | 30.2% |
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.80 | 52.0 | 3.23e-01 | 74.1% | 13.9% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.80 | 57.0 | 5.13e-01 | 74.1% | 77.5% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 54.0 | 4.77e-01 | 72.2% | 86.8% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.78 | 64.0 | 4.28e-01 | 96.3% | 24.5% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.77 | 52.0 | 4.44e-01 | 70.4% | 46.5% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.73 | 54.0 | 4.53e-01 | 77.8% | 81.8% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.70 | 51.0 | 4.04e-01 | 77.8% | 42.5% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.69 | 53.0 | 3.44e-01 | 81.5% | 46.1% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.69 | 52.0 | 4.44e-01 | 79.6% | 52.4% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 48.0 | 4.50e-01 | 85.2% | 60.3% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.66 | 49.0 | 3.36e-01 | 81.5% | 51.5% |
| 4htpB00 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.66 | 47.0 | 3.09e-01 | 75.9% | 18.0% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 45.0 | 4.41e-01 | 74.1% | 72.6% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.66 | 58.0 | 3.47e-01 | 96.3% | 36.1% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.65 | 44.0 | 3.91e-01 | 90.7% | 47.5% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.65 | 44.0 | 3.90e-01 | 72.2% | 48.1% |
| 1pkfA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 54.0 | 3.24e-01 | 96.3% | 35.7% |
| 2vyrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.64 | 44.0 | 3.90e-01 | 75.9% | 47.1% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 51.0 | 3.17e-01 | 90.7% | 17.2% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 53.0 | 3.42e-01 | 96.3% | 50.0% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 54.0 | 3.22e-01 | 98.1% | 43.8% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 53.0 | 3.19e-01 | 96.3% | 53.1% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.62 | 41.0 | 2.55e-01 | 72.2% | 12.0% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.61 | 50.0 | 4.32e-01 | 88.9% | 57.8% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 41.0 | 3.81e-01 | 70.4% | 72.1% |
| 1vzsA01 | 1.10.246.110 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 | 0.60 | 43.0 | 4.08e-01 | 74.1% | 69.8% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.60 | 43.0 | 3.63e-01 | 90.7% | 44.6% |
| 4myzC00 | 6.10.250.3430 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 48.0 | 4.95e-01 | 88.9% | 100.0% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.56 | 46.0 | 3.39e-01 | 96.3% | 76.9% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.54 | 37.0 | 3.26e-01 | 79.6% | 47.0% |
| 2hwjA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 38.0 | 3.68e-01 | 77.8% | 100.0% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 46.0 | 3.68e-01 | 98.1% | 55.8% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507551 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.80 | 58.0 | 4.72e-01 | 75.9% | 46.3% |
| 4939412 | 4163.1.1.4 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › PF27418 | 0.80 | 54.0 | 4.06e-01 | 70.4% | 79.2% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.79 | 57.0 | 5.05e-01 | 75.9% | 57.3% |
| 3849547 | 4992.1.1.25 ↗ | extended segments › RelB-like › RelB-like › RelB-like › SHCBP_N | 0.77 | 52.0 | 4.32e-01 | 70.4% | 42.1% |
| 4929363 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 59.0 | 4.52e-01 | 83.3% | 38.3% |
| 3111731 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.76 | 54.0 | 3.30e-01 | 74.1% | 23.6% |
| 4259729 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.75 | 52.0 | 3.80e-01 | 70.4% | 28.1% |
| 3286277 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.75 | 53.0 | 3.62e-01 | 79.6% | 22.2% |
| 5069145 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.75 | 57.0 | 3.77e-01 | 81.5% | 21.5% |
| 3541873 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.74 | 55.0 | 3.95e-01 | 77.8% | 92.1% |
| 4984419 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.72 | 54.0 | 3.41e-01 | 79.6% | 37.1% |
| 3390157 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.70 | 55.0 | 4.71e-01 | 85.2% | 70.6% |
| 4988487 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.70 | 51.0 | 4.57e-01 | 79.6% | 57.0% |
| 3609189 | 192.29.1.19 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon | 0.69 | 60.0 | 4.12e-01 | 96.3% | 81.5% |
| 3253023 | 708.1.2.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP | 0.67 | 47.0 | 3.33e-01 | 77.8% | 25.2% |
| 3598562 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.67 | 54.0 | 4.57e-01 | 90.7% | 55.9% |
| 3180353 | 601.7.1.37 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Las1 | 0.66 | 50.0 | 3.42e-01 | 79.6% | 25.7% |
| 4996376 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.64 | 53.0 | 3.27e-01 | 96.3% | 17.8% |
| 3594966 | 3614.1.2.0 ↗ | alpha arrays › T4 RNA ligase › T4 RNA ligase | 0.62 | 42.0 | 3.51e-01 | 72.2% | 88.0% |
| 1715101 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.61 | 46.0 | 3.39e-01 | 83.3% | 39.2% |
| 4007989 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.61 | 53.0 | 3.15e-01 | 98.1% | 70.1% |
| 4535381 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.59 | 45.0 | 3.11e-01 | 90.7% | 45.3% |
| 4021754 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 3.12e-01 | 90.7% | 51.4% |