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NC_020875.1__YP_007677225.1__CYXG_00036__00036
Bact-VirNC_020875.1__YP_007677225.1__CYXG_00036__00036
Identity
- Accession:
- NC_020875 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Greenvirus›
Synechococcus_phage_S-SSM4
TaxID: 536466
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-65
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 51.0 | 5.42e-01 | 94.6% | 100.0% |
| 4q65A00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.64 | 54.0 | 3.25e-01 | 98.2% | 61.1% |
| 2nt2A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.64 | 53.0 | 4.06e-01 | 100.0% | 38.0% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.64 | 54.0 | 4.18e-01 | 100.0% | 92.6% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 53.0 | 4.79e-01 | 100.0% | 71.1% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 45.0 | 4.72e-01 | 91.1% | 90.0% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.63 | 42.0 | 3.57e-01 | 71.4% | 56.9% |
| 8e9gE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.62 | 50.0 | 4.92e-01 | 96.4% | 84.1% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 45.0 | 4.71e-01 | 82.1% | 95.7% |
| 2zb9A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 45.0 | 4.68e-01 | 87.5% | 92.0% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.61 | 52.0 | 4.25e-01 | 100.0% | 85.3% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.60 | 51.0 | 4.32e-01 | 100.0% | 60.6% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.58 | 46.0 | 4.49e-01 | 89.3% | 81.0% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 40.0 | 2.98e-01 | 73.2% | 30.6% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 42.0 | 3.79e-01 | 100.0% | 56.4% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.57 | 47.0 | 4.25e-01 | 100.0% | 74.1% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.56 | 48.0 | 4.11e-01 | 100.0% | 60.2% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 46.0 | 3.44e-01 | 100.0% | 41.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 45.0 | 3.80e-01 | 100.0% | 77.4% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.54 | 44.0 | 3.78e-01 | 94.6% | 67.0% |
| 1dgfA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.53 | 44.0 | 3.61e-01 | 100.0% | 48.2% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 41.0 | 3.13e-01 | 98.2% | 93.3% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.53 | 36.0 | 3.41e-01 | 71.4% | 58.8% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.53 | 37.0 | 3.42e-01 | 75.0% | 90.5% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 44.0 | 4.09e-01 | 100.0% | 77.3% |
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.52 | 42.0 | 3.74e-01 | 98.2% | 66.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.52 | 35.0 | 3.44e-01 | 83.9% | 64.1% |
| 3c64A00 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 41.0 | 3.15e-01 | 100.0% | 88.8% |
| 1v63A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.50 | 30.0 | 2.58e-01 | 75.0% | 32.7% |
| 2lt3A01 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.50 | 39.0 | 3.41e-01 | 94.6% | 59.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3619884 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.72 | 62.0 | 4.41e-01 | 100.0% | 42.2% |
| 3685074 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.72 | 62.0 | 6.08e-01 | 100.0% | 95.0% |
| 3729589 | 101.1.1.176 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DEK_C | 0.70 | 58.0 | 5.90e-01 | 96.4% | 100.0% |
| 3226082 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.69 | 49.0 | 3.92e-01 | 75.0% | 49.1% |
| 3882320 | 101.1.17.19 ↗ | alpha arrays › HTH › HTH › FF domain › DEK_C | 0.69 | 59.0 | 5.85e-01 | 100.0% | 93.3% |
| 3792105 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.68 | 57.0 | 5.60e-01 | 100.0% | 91.7% |
| 3903368 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.67 | 55.0 | 4.01e-01 | 91.1% | 69.3% |
| 5079588 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.67 | 56.0 | 4.92e-01 | 100.0% | 83.3% |
| 3919329 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.66 | 43.0 | 3.41e-01 | 71.4% | 33.0% |
| 3403406 | 101.1.1.103 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 | 0.65 | 48.0 | 4.97e-01 | 91.1% | 90.0% |
| 4024170 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 47.0 | 4.63e-01 | 80.4% | 76.7% |
| 3610704 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 53.0 | 4.76e-01 | 96.4% | 65.1% |
| 5014896 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 50.0 | 3.61e-01 | 89.3% | 48.2% |
| 3998718 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.61 | 53.0 | 4.81e-01 | 100.0% | 72.2% |
| 3798210 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 44.0 | 4.62e-01 | 96.4% | 98.0% |
| 3192660 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.58 | 47.0 | 4.15e-01 | 100.0% | 64.2% |
| 4495272 | 540.1.1.1 ↗ | few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B | 0.58 | 46.0 | 4.41e-01 | 100.0% | 77.1% |
| 4102269 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.58 | 49.0 | 4.21e-01 | 100.0% | 63.2% |
| 3305598 | 101.1.1.223 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ELK+Homeobox_KN | 0.57 | 45.0 | 3.87e-01 | 96.4% | 52.0% |
| 3304111 | 185.1.1.3 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Hydrophob_seed | 0.56 | 40.0 | 3.75e-01 | 89.3% | 59.5% |
| 3640877 | 101.1.2.627 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ovate | 0.56 | 45.0 | 4.59e-01 | 96.4% | 98.2% |
| 4586835 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.56 | 45.0 | 4.33e-01 | 96.4% | 80.0% |
| 4967133 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.56 | 46.0 | 3.42e-01 | 100.0% | 40.0% |
| 3528634 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.55 | 45.0 | 4.00e-01 | 96.4% | 62.4% |
| 3925645 | 3198.1.1.1 ↗ | alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA | 0.55 | 45.0 | 3.61e-01 | 94.6% | 47.5% |
| 3818442 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.55 | 45.0 | 4.16e-01 | 100.0% | 83.7% |
| 3268163 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 42.0 | 3.28e-01 | 100.0% | 48.3% |