Back to structures

YP_007761597.1

Arc-Vir

NC_020998__YP_007761597.1__K745-gp08__00008

Identity

Accession:
NC_020998 ↗
Protein ID:
YP_007761597.1 ↗
Kingdom:
archaea

Quality

75.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-75
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 52.0 3.84e-01 75.6% 29.5%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 51.0 3.15e-01 75.6% 12.2%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 51.0 3.83e-01 75.6% 29.4%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 50.0 3.85e-01 75.6% 32.1%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 50.0 4.07e-01 75.6% 40.4%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 48.0 3.74e-01 73.3% 51.5%
1x8mA01 2.60.120.520 Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 0.69 51.0 3.83e-01 84.4% 54.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.45e-01 100.0% 62.0%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.68 54.0 3.92e-01 100.0% 74.2%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 48.0 3.43e-01 77.8% 24.5%
1ywkC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 55.0 3.53e-01 100.0% 36.8%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 47.0 3.63e-01 75.6% 31.8%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 54.0 3.48e-01 97.8% 40.8%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 47.0 3.47e-01 75.6% 27.3%
1y3tA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 49.0 3.45e-01 86.7% 72.9%
3myxA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 49.0 3.87e-01 91.1% 58.3%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 45.0 3.53e-01 73.3% 51.4%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 48.0 3.75e-01 88.9% 60.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 3.19e-01 100.0% 27.5%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 51.0 3.90e-01 97.8% 58.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.05e-01 100.0% 56.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 45.0 4.18e-01 100.0% 62.7%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 3.70e-01 75.6% 69.9%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.61 49.0 3.61e-01 100.0% 32.8%
3k4iA01 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.60 44.0 3.12e-01 84.4% 74.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.33e-01 95.6% 94.1%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 3.77e-01 97.8% 91.0%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 37.0 2.94e-01 100.0% 28.0%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 3.11e-01 77.8% 70.4%
6vhyC01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 44.0 2.61e-01 88.9% 79.9%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 41.0 3.19e-01 88.9% 92.1%
3nyqA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 42.0 2.53e-01 88.9% 82.4%
4a5pB01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.55 37.0 2.81e-01 73.3% 77.6%
2v7bA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 41.0 2.47e-01 88.9% 82.4%
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.59e-01 95.6% 74.4%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.08e-01 71.1% 62.7%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 40.0 2.74e-01 93.3% 78.4%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 36.0 3.28e-01 75.6% 85.5%
4wv3B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 42.0 2.47e-01 93.3% 74.3%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 44.0 3.06e-01 100.0% 30.4%
4gr4C02 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 41.0 2.45e-01 91.1% 79.2%
3qyaA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 43.0 2.52e-01 100.0% 94.8%
7emyA04 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 37.0 2.27e-01 86.7% 81.6%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 37.0 3.25e-01 100.0% 49.4%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 43.0 3.32e-01 100.0% 65.1%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.31e-01 84.4% 92.0%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.50 37.0 2.49e-01 100.0% 19.3%
4w8oB00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 39.0 2.36e-01 93.3% 81.0%
3etcA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 34.0 2.04e-01 75.6% 22.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252995 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.82 66.0 4.13e-01 88.9% 65.3%
3255497 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.80 65.0 4.07e-01 88.9% 64.0%
3252383 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.80 64.0 3.99e-01 88.9% 61.3%
4015504 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 53.0 3.66e-01 75.6% 22.6%
5065774 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 53.0 4.11e-01 75.6% 35.0%
4965211 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.74 51.0 3.87e-01 75.6% 30.4%
4497102 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.73 61.0 4.15e-01 100.0% 68.3%
4004354 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.72 62.0 4.45e-01 100.0% 85.9%
3968004 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.71 58.0 4.16e-01 100.0% 70.3%
3291419 10.12.1.61 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HgmA_N 0.71 54.0 3.44e-01 88.9% 52.9%
4032989 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 58.0 4.26e-01 100.0% 77.1%
3288359 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.71 59.0 3.94e-01 100.0% 77.4%
3974206 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 59.0 4.18e-01 100.0% 72.9%
3974066 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.71 59.0 4.19e-01 100.0% 78.7%
3943746 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.70 48.0 3.63e-01 75.6% 29.2%
3946257 10.12.1.85 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.69 57.0 3.85e-01 100.0% 75.8%
3387563 10.12.1.64 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N 0.69 57.0 3.90e-01 100.0% 67.8%
3988168 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.69 55.0 3.93e-01 100.0% 72.1%
4007473 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.69 57.0 4.19e-01 100.0% 87.4%
3692573 10.12.1.61 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HgmA_N 0.69 52.0 3.21e-01 88.9% 42.6%
5062005 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 48.0 3.58e-01 75.6% 29.2%
4007792 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.68 57.0 4.16e-01 100.0% 84.4%
4346946 387.2.1.0 few secondary structure elements › omega toxin-like 0.68 47.0 4.84e-01 73.3% 84.6%
4010514 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 57.0 3.91e-01 100.0% 67.4%
5053030 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 47.0 4.01e-01 75.6% 43.8%
5051145 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 47.0 3.64e-01 75.6% 31.8%
3967079 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.68 56.0 3.74e-01 100.0% 54.6%
4270486 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.68 54.0 3.46e-01 100.0% 33.0%
4955697 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 47.0 3.68e-01 75.6% 33.3%
4995691 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 47.0 3.75e-01 75.6% 35.0%
5017936 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.67 47.0 3.56e-01 75.6% 30.4%
3588800 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.67 55.0 3.70e-01 100.0% 64.9%
4392763 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.67 54.0 3.66e-01 100.0% 56.1%
1396630 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.66 53.0 3.81e-01 97.8% 47.0%
4561982 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 53.0 3.64e-01 100.0% 58.9%
4419958 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.65 45.0 3.44e-01 75.6% 29.2%
1030915 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.64 52.0 3.80e-01 97.8% 51.1%
2723972 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.64 48.0 4.07e-01 93.3% 46.9%
3972190 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.64 46.0 3.52e-01 75.6% 32.4%
3590244 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.63 50.0 3.59e-01 100.0% 70.0%
4393329 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.63 50.0 3.41e-01 100.0% 55.6%
3280572 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.62 51.0 3.44e-01 100.0% 54.1%
5068179 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.62 49.0 4.12e-01 100.0% 47.8%
2006888 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.62 47.0 4.07e-01 91.1% 49.4%
3250039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 3.05e-01 71.1% 88.1%
3341969 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.60 47.0 3.59e-01 88.9% 89.6%
2099461 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.60 44.0 3.82e-01 86.7% 48.1%
4022213 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 44.0 2.50e-01 80.0% 15.1%
3573620 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.60 44.0 4.11e-01 82.2% 70.0%
4339361 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.59 49.0 3.84e-01 100.0% 50.0%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.74e-01 75.6% 76.7%
3642794 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 44.0 3.88e-01 91.1% 61.3%
5082349 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.57 44.0 3.80e-01 95.6% 60.0%
3810278 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 47.0 2.72e-01 100.0% 92.0%
3736615 4011.1.1.0 beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.55 39.0 3.17e-01 77.8% 63.2%
3966884 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.55 44.0 3.14e-01 88.9% 30.8%
3810129 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 45.0 4.12e-01 100.0% 80.0%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.54 36.0 3.69e-01 75.6% 73.3%
3381113 12.1.1.36 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD 0.53 40.0 3.50e-01 97.8% 51.1%
4315769 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 3.40e-01 97.8% 97.3%
3812041 12.1.1.36 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD 0.52 42.0 3.40e-01 88.9% 58.9%
3692605 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 38.0 2.40e-01 80.0% 88.7%
5053503 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 39.0 2.45e-01 80.0% 88.2%
4626678 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 39.0 2.51e-01 86.7% 92.2%
4294371 237.1.1.14 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Anthrax-tox_M 0.50 37.0 2.42e-01 93.3% 83.8%