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NC_021067.1__YP_007877305.1__VPBG_00144__00143
Bact-VirNC_021067.1__YP_007877305.1__VPBG_00144__00143
Identity
- Accession:
- NC_021067 ↗
- Kingdom:
- phage
Quality
75.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-52
Domain cluster:
rep: OX241464.1__CAH9014164.1__VP277E431_P0168__00168__D8-53
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 58.0 | 4.69e-01 | 89.1% | 95.7% |
| 1es6A02 | 2.60.510.10 | Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein | 0.71 | 60.0 | 4.76e-01 | 100.0% | 96.0% |
| 3rjaA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.67 | 54.0 | 3.59e-01 | 100.0% | 34.9% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.66 | 54.0 | 4.64e-01 | 100.0% | 67.1% |
| 8os3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 52.0 | 4.28e-01 | 100.0% | 46.7% |
| 2c00A03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.65 | 49.0 | 4.51e-01 | 100.0% | 61.8% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 53.0 | 3.70e-01 | 100.0% | 46.7% |
| 4yrdA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 47.0 | 3.54e-01 | 100.0% | 31.9% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.63 | 49.0 | 4.58e-01 | 100.0% | 66.7% |
| 2db8A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 47.0 | 3.71e-01 | 100.0% | 36.4% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 48.0 | 3.85e-01 | 100.0% | 41.7% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.62 | 51.0 | 4.74e-01 | 100.0% | 76.2% |
| 2jllA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 46.0 | 3.82e-01 | 100.0% | 41.8% |
| 2hvzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 49.0 | 4.39e-01 | 97.8% | 100.0% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 48.0 | 3.89e-01 | 100.0% | 43.9% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.59 | 47.0 | 3.99e-01 | 100.0% | 51.7% |
| 5e50A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.58 | 47.0 | 3.77e-01 | 95.7% | 100.0% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 42.0 | 3.24e-01 | 82.6% | 86.4% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.67e-01 | 100.0% | 46.4% |
| 7l5aA02 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.56 | 41.0 | 3.06e-01 | 84.8% | 34.3% |
| 5ejrA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 47.0 | 3.92e-01 | 100.0% | 73.3% |
| 7xc8A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.56 | 42.0 | 3.43e-01 | 100.0% | 41.2% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 40.0 | 2.90e-01 | 82.6% | 88.4% |
| 2biiA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 3.16e-01 | 100.0% | 40.8% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 40.0 | 3.25e-01 | 87.0% | 83.3% |
| 4jguA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.01e-01 | 100.0% | 32.6% |
| 3n6xA03 | 3.30.1490.270 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.54 | 40.0 | 3.77e-01 | 80.4% | 92.9% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.53 | 42.0 | 4.16e-01 | 100.0% | 89.8% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 3.43e-01 | 100.0% | 43.9% |
| 5k3xA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 3.44e-01 | 100.0% | 44.2% |
| 1whoA00 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.53 | 40.0 | 3.31e-01 | 100.0% | 43.6% |
| 6grqA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.53e-01 | 100.0% | 49.5% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.52 | 37.0 | 2.41e-01 | 78.3% | 18.1% |
| 1ajwA00 | 2.70.50.30 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 | 0.52 | 44.0 | 3.14e-01 | 100.0% | 34.5% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 44.0 | 2.96e-01 | 100.0% | 59.9% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.51 | 38.0 | 3.20e-01 | 100.0% | 54.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3760983 | 3335.1.1.3 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C | 0.77 | 69.0 | 5.30e-01 | 100.0% | 97.0% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.74 | 57.0 | 4.64e-01 | 89.1% | 93.6% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.65 | 49.0 | 3.94e-01 | 100.0% | 40.0% |
| 4881621 | 10.12.1.43 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-Fe_Oxy_2 | 0.62 | 46.0 | 2.98e-01 | 100.0% | 16.5% |
| 3221742 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.62 | 46.0 | 3.60e-01 | 82.6% | 40.9% |
| 3620456 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.61 | 50.0 | 3.87e-01 | 100.0% | 40.0% |
| 3794632 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.58 | 43.0 | 3.11e-01 | 82.6% | 76.4% |
| 5037842 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.58 | 47.0 | 3.01e-01 | 100.0% | 26.9% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 45.0 | 3.62e-01 | 100.0% | 69.1% |
| 3555970 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.56 | 48.0 | 3.28e-01 | 100.0% | 36.5% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 43.0 | 3.18e-01 | 93.5% | 52.0% |
| 4944328 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 41.0 | 3.08e-01 | 82.6% | 76.9% |
| 4028834 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.55 | 40.0 | 3.15e-01 | 84.8% | 81.7% |
| 4967778 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.55 | 39.0 | 3.21e-01 | 82.6% | 87.3% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 45.0 | 4.42e-01 | 100.0% | 98.0% |
| 5027259 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.54 | 42.0 | 3.17e-01 | 91.3% | 42.4% |
| 4985088 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.53 | 41.0 | 3.15e-01 | 91.3% | 43.1% |
| 3942988 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.53 | 40.0 | 3.72e-01 | 100.0% | 66.2% |
| 4025906 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.52 | 36.0 | 2.56e-01 | 76.1% | 43.4% |
| 5035549 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.42e-01 | 100.0% | 46.3% |
| 3998356 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 38.0 | 3.87e-01 | 89.1% | 88.9% |