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NC_021067.1__YP_007877413.1__VPBG_00252__00251
Bact-VirNC_021067.1__YP_007877413.1__VPBG_00252__00251
Identity
- Accession:
- NC_021067 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-43
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lhtA01 | 6.10.80.20 | Special › Helix non-globular › DNA polymerase; domain 1 › | 0.60 | 47.0 | 4.12e-01 | 100.0% | 65.8% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.59 | 41.0 | 2.84e-01 | 78.0% | 67.4% |
| 1b30A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 49.0 | 2.98e-01 | 100.0% | 100.0% |
| 8dpkD01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.59 | 45.0 | 2.81e-01 | 90.2% | 31.4% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.58 | 45.0 | 3.37e-01 | 100.0% | 61.1% |
| 3wscA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.57 | 43.0 | 2.85e-01 | 100.0% | 38.6% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 39.0 | 2.80e-01 | 73.2% | 29.0% |
| 1u5hA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.57 | 41.0 | 2.67e-01 | 80.5% | 69.5% |
| 1dcsA00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.54 | 42.0 | 2.65e-01 | 97.6% | 18.3% |
| 2h5gB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 40.0 | 2.57e-01 | 100.0% | 37.5% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.70e-01 | 90.2% | 98.3% |
| 4c0kA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 41.0 | 3.23e-01 | 100.0% | 51.5% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.50 | 37.0 | 2.46e-01 | 100.0% | 54.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184777 | 3373.1.1.1 ↗ | few secondary structure elements › Cellophane-induced 1 (cin1) repeats › Cellophane-induced 1 (cin1) repeats › Cellophane-induced 1 (cin1) repeats › Cin1_N | 0.60 | 47.0 | 4.23e-01 | 100.0% | 72.5% |
| 3280697 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.60 | 46.0 | 2.90e-01 | 100.0% | 94.5% |
| 3247392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 45.0 | 3.26e-01 | 100.0% | 40.0% |
| 3197410 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.56 | 38.0 | 2.22e-01 | 70.7% | 8.1% |
| 3545964 | 386.1.1.393 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF31013 | 0.56 | 38.0 | 2.79e-01 | 73.2% | 44.8% |
| 3952752 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.55 | 42.0 | 3.70e-01 | 100.0% | 56.0% |
| 3994820 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.54 | 41.0 | 2.87e-01 | 97.6% | 26.5% |
| 3938247 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 45.0 | 2.91e-01 | 100.0% | 50.5% |
| 3068250 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.53 | 44.0 | 2.76e-01 | 100.0% | 83.8% |
| 3695897 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.53 | 44.0 | 2.53e-01 | 100.0% | 31.6% |
| 4948874 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.52 | 41.0 | 2.66e-01 | 100.0% | 58.0% |
| 5029839 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 39.0 | 2.87e-01 | 100.0% | 57.3% |
| 1954739 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.50 | 38.0 | 2.71e-01 | 95.1% | 26.1% |