←Back to structures

NC_021073.1__YP_007878076.1__VPDG_00104__00103

Bact-Vir

Identity

Accession:: NC_021073 ↗
Kingdom:: phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_henriette_12B8

TaxID: 573174

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-84

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4o2hA00	3.10.450.610	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.61	37.0	2.95e-01	93.0%	30.7%
2qv8A00	3.55.40.10	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain	0.58	44.0	3.54e-01	83.1%	94.4%
3hdjA01	3.30.1780.10	Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1	0.56	45.0	3.60e-01	87.3%	86.4%
2bf6A02	2.40.220.10	Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3	0.56	38.0	3.93e-01	73.2%	75.8%
2knqA01	3.55.40.10	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain	0.55	41.0	3.46e-01	84.5%	100.0%
2q5wD00	3.10.20.30	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain	0.54	37.0	3.66e-01	98.6%	66.2%
4i92A02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	44.0	3.28e-01	93.0%	52.3%
2vhlA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.53	37.0	2.48e-01	73.2%	69.8%
2xp1A01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.52	40.0	3.69e-01	84.5%	67.4%
2laeA00	3.30.310.170	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC	0.51	40.0	3.54e-01	91.5%	99.2%
4bucA02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.51	42.0	3.08e-01	93.0%	52.5%
2lxxA00	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.51	36.0	2.92e-01	77.5%	78.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4282602	327.4.1.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N	0.69	40.0	3.74e-01	91.5%	46.7%
4368957	274.1.1.13 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH	0.60	46.0	3.61e-01	83.1%	87.7%
868467	274.1.1.13 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH	0.57	47.0	3.78e-01	91.5%	81.0%
4334008	2484.3.1.2 ↗	mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › AMP_N	0.56	43.0	3.34e-01	84.5%	80.0%
3450740	109.4.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192	0.54	40.0	2.52e-01	78.9%	44.5%
3998697	7516.1.1.12 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe	0.54	46.0	3.21e-01	93.0%	68.2%
3677690	109.4.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192	0.52	43.0	2.32e-01	90.1%	27.6%
3288510	2004.1.1.159 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M	0.51	41.0	2.95e-01	95.8%	88.8%
1277666	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.50	38.0	3.27e-01	81.7%	75.4%