←Back to structures

NC_021073.1__YP_007878101.1__VPDG_00129__00128

Bact-Vir

NC_021073.1__YP_007878101.1__VPDG_00129__00128

Identity

Accession:
NC_021073 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_henriette_12B8

TaxID: 573174

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-127
PDB
Domain cluster: rep: MK882925.1__QDF14259.1__vBDshSR4C_011__00011__D18-105
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.72 57.0 5.63e-01 94.0% 79.4%
5fcxA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.54 37.0 3.37e-01 100.0% 51.8%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 33.0 3.58e-01 80.0% 75.3%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 44.0 3.65e-01 98.0% 68.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
333304 6050.1.1.1 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1 0.78 60.0 5.92e-01 100.0% 77.9%
4673895 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 41.0 4.17e-01 79.0% 66.0%
3431874 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 41.0 4.43e-01 79.0% 78.8%
3379763 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.61 40.0 4.46e-01 79.0% 85.0%
3597925 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.60 41.0 4.67e-01 77.0% 96.0%
3177211 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 41.0 4.44e-01 78.0% 84.7%
3626808 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.58 38.0 4.42e-01 78.0% 95.7%
223875 6090.1.1.1 ↗ alpha arrays › N-terminal domain of lytM › N-terminal domain of lytM › N-terminal domain of lytM › LytM_N 0.56 42.0 4.45e-01 81.0% 93.3%
3715742 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.52 36.0 3.61e-01 72.0% 76.2%
4296289 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.51 34.0 2.79e-01 70.0% 65.9%