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NC_021190.1__YP_007947986.1__ABF05_gp51__00061

Bact-Vir

NC_021190.1__YP_007947986.1__ABF05_gp51__00061

Identity

Accession:
NC_021190 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.79 57.0 4.31e-01 77.2% 72.7%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.75 57.0 4.06e-01 96.5% 29.3%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 55.0 4.11e-01 78.9% 70.1%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.73 52.0 3.99e-01 91.2% 34.1%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 51.0 3.74e-01 77.2% 51.6%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.70 56.0 4.01e-01 96.5% 31.6%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.70 61.0 4.18e-01 98.2% 96.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 43.0 4.13e-01 82.5% 55.1%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 54.0 3.39e-01 89.5% 39.2%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.66 54.0 4.06e-01 91.2% 58.3%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 52.0 3.28e-01 89.5% 96.3%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.33e-01 87.7% 25.3%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.65 53.0 4.13e-01 91.2% 50.4%
4dnuA00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.65 52.0 3.23e-01 91.2% 86.3%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 54.0 3.75e-01 93.0% 61.4%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 47.0 2.93e-01 82.5% 17.7%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 53.0 3.64e-01 91.2% 57.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.64 46.0 4.09e-01 77.2% 52.4%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 52.0 3.62e-01 91.2% 60.8%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.13e-01 89.5% 36.2%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.63 44.0 3.71e-01 75.4% 78.4%
3witA00 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.63 44.0 4.24e-01 98.2% 65.6%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 53.0 3.68e-01 93.0% 64.6%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.31e-01 93.0% 49.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.71e-01 96.5% 73.6%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 48.0 3.02e-01 86.0% 99.0%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 52.0 3.73e-01 100.0% 41.3%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 49.0 4.53e-01 89.5% 98.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 3.94e-01 100.0% 69.9%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 52.0 3.29e-01 100.0% 91.9%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.60 50.0 2.90e-01 100.0% 46.2%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.60 52.0 4.41e-01 100.0% 64.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.59 52.0 4.12e-01 100.0% 58.5%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 48.0 4.26e-01 94.7% 97.8%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 47.0 3.83e-01 93.0% 82.8%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 3.79e-01 98.2% 88.7%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 42.0 3.95e-01 78.9% 61.1%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 48.0 3.87e-01 98.2% 84.6%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 50.0 4.13e-01 100.0% 79.4%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.58 51.0 2.99e-01 100.0% 83.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.80e-01 71.9% 81.8%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 4.01e-01 94.7% 93.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.56 43.0 3.99e-01 82.5% 93.1%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 47.0 3.62e-01 98.2% 83.8%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.62e-01 87.7% 58.9%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.42e-01 94.7% 44.1%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 47.0 4.04e-01 100.0% 61.9%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.94e-01 77.2% 87.2%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.55 46.0 3.45e-01 93.0% 73.7%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.70e-01 71.9% 72.7%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.51e-01 100.0% 48.9%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.53e-01 87.7% 90.9%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.59e-01 98.2% 95.8%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.78e-01 100.0% 40.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.45e-01 84.2% 66.3%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.51 33.0 3.62e-01 87.7% 90.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4291626 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.74 53.0 4.49e-01 91.2% 46.3%
3741303 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.74 52.0 4.58e-01 91.2% 50.6%
3418904 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.72 60.0 4.94e-01 91.2% 56.0%
3517889 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.71 61.0 4.98e-01 94.7% 68.3%
3717674 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.70 53.0 4.50e-01 80.7% 60.0%
3597662 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 58.0 3.46e-01 91.2% 33.6%
3344355 5.1.4.227 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_At4g14310 0.70 55.0 3.31e-01 89.5% 27.1%
3623319 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.70 49.0 4.36e-01 73.7% 52.5%
3177260 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.69 59.0 3.92e-01 96.5% 83.8%
4488185 3772.1.1.1 beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.68 49.0 3.70e-01 77.2% 51.4%
2696975 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.68 55.0 3.73e-01 87.7% 33.0%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 56.0 3.39e-01 91.2% 68.2%
5027368 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.68 55.0 5.32e-01 91.2% 98.5%
3546306 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.68 53.0 4.48e-01 84.2% 65.3%
5072222 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.67 56.0 5.18e-01 94.7% 97.3%
2588601 3772.1.1.1 beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.66 55.0 4.16e-01 91.2% 62.6%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.66 55.0 3.25e-01 96.5% 28.8%
3172580 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.21e-01 91.2% 40.0%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.65 55.0 3.64e-01 96.5% 58.4%
3973760 3772.1.1.1 beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.65 58.0 4.50e-01 98.2% 69.2%
3699699 5.1.4.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.65 52.0 3.51e-01 91.2% 36.9%
3588002 298.1.1.20 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.65 55.0 3.78e-01 93.0% 60.0%
5074928 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 51.0 4.90e-01 94.7% 76.9%
3931562 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 53.0 3.67e-01 98.2% 62.7%
3712908 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.64 53.0 4.46e-01 100.0% 72.5%
68497 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.64 49.0 4.98e-01 86.0% 100.0%
3602012 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.64 54.0 5.07e-01 94.7% 81.4%
3708219 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.63 53.0 5.02e-01 94.7% 80.0%
4797891 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 55.0 5.17e-01 98.2% 78.3%
5020059 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.63 48.0 4.02e-01 82.5% 90.0%
5644 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.63 49.0 5.01e-01 86.0% 100.0%
4210618 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.63 55.0 3.23e-01 96.5% 12.5%
3914165 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.63 51.0 3.15e-01 91.2% 84.4%
4028075 5.1.4.255 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.63 50.0 3.03e-01 91.2% 26.6%
3900097 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 56.0 4.21e-01 100.0% 45.9%
3386276 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.62 47.0 4.84e-01 82.5% 100.0%
4863414 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 43.0 3.02e-01 80.7% 21.8%
4944335 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 49.0 4.25e-01 98.2% 54.8%
3680446 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.62 50.0 3.76e-01 87.7% 40.7%
3263689 5.1.4.348 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.62 50.0 3.10e-01 91.2% 77.7%
4965819 5.1.4.667 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HVO_0234 0.61 50.0 3.27e-01 91.2% 79.2%
3386275 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.61 50.0 4.99e-01 93.0% 100.0%
3783813 5.1.4.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.60 47.0 2.95e-01 91.2% 58.3%
3245227 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.60 49.0 3.06e-01 91.2% 78.4%
3256064 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 48.0 2.92e-01 89.5% 31.2%
4452140 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.60 52.0 4.14e-01 98.2% 85.2%
3975292 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.60 53.0 3.23e-01 100.0% 75.6%
3234953 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 52.0 3.50e-01 98.2% 26.5%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 40.0 4.09e-01 78.9% 76.4%
3384946 5.1.10.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 0.57 42.0 3.26e-01 80.7% 38.5%
3274863 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.57 49.0 3.89e-01 98.2% 86.6%
3806989 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.57 48.0 3.05e-01 93.0% 99.3%
3716195 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.56 49.0 3.62e-01 100.0% 68.7%
154175 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.55 46.0 3.66e-01 100.0% 83.8%
3722144 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 44.0 3.55e-01 100.0% 76.1%
4573891 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.53 43.0 3.54e-01 100.0% 98.4%