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YP_008058577.1
Arc-VirNC_021321__YP_008058577.1__M192-gp120__00011
Identity
- Accession:
- NC_021321 ↗
- Protein ID:
- YP_008058577.1 ↗
- Kingdom:
- archaea
Quality
79.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Hafunaviridae›
Haloferacalesvirus›
Halorubrum_tailed_phage_8
TaxID: 2847109
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-96
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nrjB01 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.75 | 57.0 | 4.76e-01 | 80.2% | 61.5% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.00e-01 | 82.3% | 41.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256881 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.78 | 59.0 | 5.05e-01 | 78.1% | 52.4% |
| 3947984 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.75 | 58.0 | 5.32e-01 | 88.5% | 64.2% |
| 3789043 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.74 | 51.0 | 3.78e-01 | 71.9% | 44.1% |
| 3257654 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 61.0 | 5.56e-01 | 88.5% | 72.0% |
| 3199964 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.73 | 58.0 | 4.59e-01 | 84.4% | 53.2% |
| 3278124 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.72 | 57.0 | 5.26e-01 | 86.5% | 66.7% |
| 5007978 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.70 | 58.0 | 5.04e-01 | 85.4% | 72.6% |
| 5018655 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.70 | 46.0 | 4.41e-01 | 74.0% | 58.2% |
| 4670424 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.62 | 45.0 | 2.69e-01 | 77.1% | 58.8% |
| 3476064 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.61 | 43.0 | 3.97e-01 | 91.7% | 57.5% |
| 3780939 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 49.0 | 3.11e-01 | 99.0% | 36.7% |