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YP_008058702.1

Arc-Vir

NC_021322__YP_008058702.1__M198-gp12__00012

Identity

Accession:
NC_021322 ↗
Protein ID:
YP_008058702.1 ↗
Kingdom:
archaea

Quality

47.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Madisaviridae› Clampvirus› Haloarcula_hispanica_tailed_virus_1

TaxID: 1273750

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 689-855
PDB
Domain cluster: rep: IMGVR_UViG_2791355072_000002-2791355072-2792541805__D697-852
D2 high residues 862-935
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.74 61.0 4.93e-01 90.5% 94.3%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.73 65.0 5.29e-01 100.0% 56.8%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.68 55.0 5.05e-01 100.0% 67.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.67 53.0 5.05e-01 100.0% 71.9%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 54.0 4.39e-01 90.5% 79.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.66 54.0 4.36e-01 89.2% 80.0%
1ayrB02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 49.0 3.73e-01 83.8% 93.2%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.64 51.0 4.24e-01 90.5% 88.4%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.66e-01 87.8% 39.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 47.0 3.25e-01 82.4% 39.8%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.62 45.0 3.73e-01 75.7% 47.7%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.62 49.0 3.18e-01 93.2% 30.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.72e-01 87.8% 41.4%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 47.0 2.80e-01 81.1% 24.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 46.0 3.69e-01 81.1% 47.5%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.83e-01 91.9% 100.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.59 41.0 3.98e-01 100.0% 63.2%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.59 47.0 3.86e-01 90.5% 88.2%
1srzA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 43.0 4.46e-01 95.9% 85.3%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.58 43.0 3.67e-01 81.1% 59.4%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 4.08e-01 100.0% 75.7%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.01e-01 89.2% 92.3%
1vemA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.28e-01 89.2% 97.0%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.57 44.0 3.84e-01 85.1% 85.8%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 46.0 4.43e-01 89.2% 77.4%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.00e-01 100.0% 75.5%
4isyC01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 50.0 4.12e-01 100.0% 84.6%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 40.0 4.15e-01 77.0% 87.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 45.0 4.08e-01 91.9% 87.5%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 42.0 2.82e-01 82.4% 31.0%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.46e-01 89.2% 91.8%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 44.0 3.70e-01 91.9% 59.6%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.54 39.0 3.72e-01 100.0% 63.7%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.79e-01 90.5% 67.8%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.65e-01 100.0% 66.9%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.77e-01 90.5% 89.4%
2hv2A03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 48.0 3.82e-01 100.0% 61.1%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 43.0 3.56e-01 91.9% 52.5%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.51e-01 93.2% 74.2%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.92e-01 94.6% 42.8%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.52 38.0 3.07e-01 77.0% 65.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 42.0 3.58e-01 93.2% 71.4%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 42.0 3.27e-01 90.5% 94.6%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.50e-01 77.0% 55.2%
2essA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.62e-01 100.0% 91.6%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.90e-01 97.3% 74.4%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.85e-01 94.6% 31.1%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.50 38.0 3.62e-01 83.8% 75.8%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.21e-01 90.5% 70.7%
3if8B03 6.20.270.10 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › 0.50 29.0 3.14e-01 90.5% 68.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975431 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.84 65.0 6.07e-01 90.5% 67.8%
5047469 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 66.0 5.42e-01 100.0% 57.7%
4997106 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 63.0 5.38e-01 100.0% 61.7%
4992321 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.71 45.0 4.92e-01 74.3% 80.0%
3625615 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 48.0 3.83e-01 71.6% 60.7%
4027078 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.68 58.0 3.88e-01 100.0% 46.6%
3248828 9.1.1.33 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF1365 0.67 56.0 3.73e-01 89.2% 28.1%
4591449 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.67 57.0 3.53e-01 94.6% 51.9%
4606701 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.65 55.0 3.59e-01 94.6% 60.5%
3977487 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.64 45.0 3.92e-01 73.0% 70.9%
3707891 243.3.1.73 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7920 0.63 51.0 4.84e-01 89.2% 92.2%
5041249 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 52.0 5.30e-01 90.5% 97.1%
3598422 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.63 43.0 3.91e-01 71.6% 81.0%
3454372 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.62 47.0 4.26e-01 100.0% 60.0%
4403206 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.62 49.0 3.97e-01 90.5% 67.1%
3730063 213.1.1.21 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.61 56.0 3.83e-01 100.0% 46.8%
3240430 4111.1.1.3 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.61 42.0 3.41e-01 73.0% 64.5%
4806775 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 50.0 4.33e-01 90.5% 96.6%
3636863 213.1.1.21 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.61 56.0 3.89e-01 100.0% 46.9%
4980109 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.61 46.0 3.51e-01 81.1% 50.3%
3665695 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.61 50.0 3.12e-01 94.6% 27.1%
4024732 295.1.1.40 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Microp_apicomplexa_10 0.61 40.0 3.97e-01 81.1% 61.3%
3634062 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.60 47.0 3.23e-01 89.2% 24.9%
5053359 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.08e-01 71.6% 70.0%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.08e-01 89.2% 25.2%
3290484 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 51.0 3.96e-01 100.0% 41.7%
3414220 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 48.0 3.17e-01 90.5% 32.4%
3990949 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.59 48.0 3.33e-01 93.2% 26.1%
4218863 213.1.1.21 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.59 51.0 3.58e-01 94.6% 45.7%
3168583 3435.1.1.2 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-N 0.59 52.0 4.35e-01 100.0% 56.9%
3668896 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.15e-01 97.3% 77.3%
3225830 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.58 53.0 3.82e-01 100.0% 80.0%
6323 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.58 49.0 4.11e-01 100.0% 77.3%
4460237 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 47.0 4.69e-01 91.9% 89.3%
3827447 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 41.0 3.05e-01 86.5% 28.7%
3746311 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.57 52.0 3.71e-01 100.0% 80.3%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 45.0 4.68e-01 87.8% 94.3%
6321 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 49.0 4.07e-01 100.0% 75.0%
5035278 5.1.5.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta_propel 0.57 43.0 3.08e-01 81.1% 38.1%
4967383 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 50.0 3.71e-01 100.0% 82.1%
3926611 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.55 42.0 2.76e-01 81.1% 29.8%
3606814 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 41.0 4.12e-01 98.6% 76.9%
3993718 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.55 40.0 4.05e-01 77.0% 90.7%
5050503 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 2.88e-01 94.6% 25.8%
1826875 330.13.1.1 ↗ a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor › T7-like_gp12 0.54 43.0 4.12e-01 93.2% 75.3%
3501871 213.1.1.21 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.54 48.0 3.44e-01 100.0% 48.6%
4680273 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.54 41.0 3.63e-01 87.8% 54.8%
4027492 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.96e-01 89.2% 27.8%
2507496 206.1.3.24 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 0.53 46.0 2.95e-01 100.0% 19.5%
4009799 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.53 40.0 3.66e-01 90.5% 59.0%
5046458 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 47.0 3.61e-01 100.0% 84.0%
4266613 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 42.0 4.02e-01 95.9% 75.3%
4655950 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.51 42.0 3.71e-01 93.2% 61.7%
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.51 44.0 3.54e-01 98.6% 56.7%
3593376 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 40.0 3.72e-01 98.6% 68.4%
D3 medium residues 108-209_279-319_393-409_421-477
PDB