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YP_008059073.1

Arc-Vir

NC_021327__YP_008059073.1__M200-gp031__00031

Identity

Accession:
NC_021327 ↗
Protein ID:
YP_008059073.1 ↗
Kingdom:
archaea

Quality

59.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Tredecimvirus› Halovirus_HCTV-5

TaxID: 1273748

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-191
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.68 37.0 3.41e-01 99.1% 40.4%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 36.0 4.55e-01 96.2% 87.5%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 38.0 4.31e-01 96.2% 77.5%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 31.0 3.73e-01 86.8% 69.0%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 35.0 4.29e-01 83.0% 90.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.37e-01 79.2% 96.7%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 46.0 3.46e-01 96.2% 87.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082754 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.89 40.0 5.33e-01 84.9% 78.3%
5062184 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.84 40.0 5.26e-01 85.8% 81.7%
5024733 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.83 39.0 4.97e-01 74.5% 75.4%
3957509 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.82 40.0 5.22e-01 84.9% 83.3%
5049870 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 38.0 4.68e-01 99.1% 72.9%
4977106 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 38.0 4.88e-01 100.0% 81.5%
4961377 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.75 36.0 4.48e-01 99.1% 72.9%
4979451 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 38.0 4.70e-01 82.1% 81.5%
4945046 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 37.0 3.73e-01 74.5% 50.5%
5055912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 38.0 4.63e-01 72.6% 84.3%
3908686 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 47.0 4.78e-01 87.7% 81.0%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.53 36.0 3.77e-01 70.8% 83.0%
D2 medium residues 345-438
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 43.0 3.88e-01 95.7% 44.3%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 60.0 5.59e-01 92.6% 96.5%
2j9qB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 44.0 3.23e-01 73.4% 53.5%