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YP_008059190.1

Arc-Vir

NC_021327__YP_008059190.1__M200-gp081__00148

Identity

Accession:
NC_021327 ↗
Protein ID:
YP_008059190.1 ↗
Kingdom:
archaea

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Tredecimvirus› Halovirus_HCTV-5

TaxID: 1273748

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-42
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.70 58.0 5.10e-01 95.1% 88.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.03e-01 100.0% 73.8%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.69 54.0 5.34e-01 92.7% 95.3%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 53.0 4.21e-01 90.2% 42.9%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 53.0 4.52e-01 90.2% 54.8%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.79e-01 100.0% 93.8%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.65 53.0 4.62e-01 100.0% 57.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.09e-01 97.6% 55.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.75e-01 100.0% 73.4%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 52.0 4.67e-01 95.1% 85.2%
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.63 45.0 3.23e-01 85.4% 24.8%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.54e-01 100.0% 78.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.65e-01 100.0% 96.5%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.55e-01 100.0% 93.2%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.16e-01 75.6% 56.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.50e-01 100.0% 96.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.32e-01 100.0% 80.9%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.31e-01 97.6% 83.1%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 49.0 3.63e-01 100.0% 73.0%
2m6nA00 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 48.0 4.67e-01 90.2% 80.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.52e-01 90.2% 66.7%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 48.0 3.87e-01 100.0% 76.8%
5w5yB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.61 48.0 3.51e-01 100.0% 49.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.43e-01 100.0% 87.1%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 43.0 3.74e-01 85.4% 47.9%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 43.0 3.79e-01 87.8% 63.9%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.16e-01 92.7% 41.7%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.63e-01 97.6% 55.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 44.0 4.06e-01 100.0% 83.3%
1iq8A03 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 39.0 3.38e-01 80.5% 73.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.96e-01 100.0% 76.7%
1kcgB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 41.0 3.04e-01 92.7% 48.0%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.77e-01 100.0% 75.0%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 2.61e-01 95.1% 92.2%
2k4xA01 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 34.0 3.54e-01 73.2% 80.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3292956 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.84 66.0 6.19e-01 85.4% 76.0%
3461599 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 65.0 6.08e-01 87.8% 74.0%
4951495 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.79 66.0 6.69e-01 92.7% 97.5%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.73 59.0 3.72e-01 100.0% 17.3%
1489659 375.1.1.17 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f 0.73 59.0 5.69e-01 97.6% 93.8%
5031811 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 56.0 5.52e-01 92.7% 100.0%
4203984 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.71 57.0 3.23e-01 100.0% 9.0%
5014374 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.71 57.0 3.23e-01 100.0% 9.0%
3622302 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 59.0 4.93e-01 100.0% 61.3%
1879331 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.70 52.0 5.17e-01 80.5% 79.1%
3742502 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.69 59.0 4.63e-01 100.0% 81.1%
1210727 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.68 58.0 4.65e-01 100.0% 79.1%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 52.0 5.11e-01 100.0% 77.8%
5018525 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 50.0 5.09e-01 90.2% 85.0%
4028888 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 48.0 4.93e-01 78.0% 80.0%
3808136 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.68 58.0 4.56e-01 100.0% 80.0%
3537747 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.67 52.0 4.77e-01 95.1% 63.6%
3506351 375.1.1.44 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.67 49.0 5.13e-01 87.8% 94.3%
3333592 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 55.0 3.61e-01 100.0% 40.5%
3838045 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 48.0 5.08e-01 80.5% 94.3%
3638416 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.67 54.0 5.07e-01 100.0% 76.4%
3826837 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 54.0 4.24e-01 97.6% 43.2%
3666160 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.66 54.0 4.18e-01 100.0% 41.0%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 55.0 5.12e-01 100.0% 76.4%
5075345 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.66 52.0 4.95e-01 92.7% 74.0%
4969991 375.1.1.213 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.66 51.0 5.02e-01 97.6% 84.4%
3737810 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 55.0 4.76e-01 100.0% 68.1%
3240279 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.66 53.0 4.37e-01 100.0% 62.4%
3260512 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.65 48.0 4.46e-01 95.1% 61.8%
3797486 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.71e-01 97.6% 69.2%
4968629 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 49.0 4.59e-01 87.8% 66.7%
3503411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 50.0 4.92e-01 92.7% 80.0%
3304945 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 53.0 4.59e-01 100.0% 90.0%
4038151 375.1.1.202 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.63 47.0 4.84e-01 90.2% 100.0%
3573775 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 4.59e-01 100.0% 84.6%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 49.0 4.56e-01 100.0% 90.0%
3467267 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.62 49.0 4.36e-01 95.1% 80.0%
4437923 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 3.06e-01 100.0% 15.9%
3810686 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.61 50.0 4.22e-01 100.0% 76.2%
5061079 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.61 46.0 4.53e-01 87.8% 82.2%
5058552 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.60 45.0 4.30e-01 82.9% 68.0%
3603405 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.60 46.0 3.45e-01 100.0% 31.1%
3177365 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 46.0 4.31e-01 100.0% 76.7%
5038671 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.20e-01 78.0% 64.0%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.59 46.0 2.96e-01 97.6% 18.4%
5043002 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.59 48.0 4.78e-01 100.0% 95.6%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 46.0 3.87e-01 100.0% 69.4%
3322461 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.58 47.0 4.31e-01 97.6% 98.3%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.60e-01 97.6% 93.3%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.58 45.0 4.37e-01 100.0% 79.6%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 46.0 3.65e-01 97.6% 73.7%
4948064 375.10.1.6 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF 0.57 45.0 4.36e-01 97.6% 82.0%
4227538 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.57 45.0 4.25e-01 97.6% 96.4%
2800346 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.46e-01 92.7% 86.0%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.56 44.0 4.10e-01 100.0% 81.7%
5021955 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.55 40.0 3.89e-01 85.4% 86.0%
1405101 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 41.0 4.02e-01 97.6% 92.0%
3987431 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 2.50e-01 100.0% 35.0%
4963111 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 40.0 4.04e-01 100.0% 100.0%
5005109 375.11.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ › zf_CopZ 0.51 40.0 3.71e-01 95.1% 72.9%
3712065 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.50e-01 95.1% 90.8%