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YP_008059625.1
Arc-VirNC_021330__YP_008059625.1__M202-gp152__00063
Identity
- Accession:
- NC_021330 ↗
- Protein ID:
- YP_008059625.1 ↗
- Kingdom:
- archaea
Quality
70.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Hacavirus›
Haloarcula_californiae_tailed_virus_1
TaxID: 1273746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-325_339-378
Domain cluster:
rep: OP297541.2__UXE04466.1__SEA_FUNSIZED_1__00001__D176-414
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20314.4 best | DUF6610 | 207.7 | 1.90e-61 | 77.9% | 100.0% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iq8A01 | 3.20.20.105 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like | 0.75 | 63.0 | 5.80e-01 | 86.2% | 93.5% |
| 3pztB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 54.0 | 5.40e-01 | 82.8% | 93.2% |
| 5xd7A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.66 | 48.0 | 5.38e-01 | 83.8% | 91.8% |
| 3cnyA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.66 | 55.0 | 5.47e-01 | 85.5% | 99.7% |
| 5uckB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 55.0 | 5.56e-01 | 87.6% | 99.3% |
| 3nl6B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 48.0 | 5.42e-01 | 82.8% | 98.2% |
| 2hmcA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 51.0 | 4.98e-01 | 82.1% | 97.8% |
| 2yxxA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.64 | 47.0 | 5.29e-01 | 88.6% | 95.6% |
| 1a0cA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.64 | 58.0 | 5.00e-01 | 95.9% | 83.8% |
| 1telA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.63 | 53.0 | 5.37e-01 | 85.9% | 89.4% |
| 3t7vA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 52.0 | 4.92e-01 | 84.5% | 84.0% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 53.0 | 5.04e-01 | 88.6% | 92.6% |
| 3g8rA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 51.0 | 5.43e-01 | 84.8% | 100.0% |
| 1qwgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 51.0 | 5.44e-01 | 99.7% | 100.0% |
| 6dvhB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 56.0 | 5.06e-01 | 100.0% | 98.5% |
| 3qfwB02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.59 | 47.0 | 5.02e-01 | 86.2% | 94.0% |
| 2oz8A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.59 | 45.0 | 5.01e-01 | 96.2% | 97.4% |
| 2vzoA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 46.0 | 4.41e-01 | 82.8% | 95.0% |
| 3ks6A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.58 | 48.0 | 5.17e-01 | 85.2% | 100.0% |
| 3tr9B00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.57 | 47.0 | 4.89e-01 | 84.8% | 95.6% |
| 3dugA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 46.0 | 4.62e-01 | 86.2% | 96.7% |
| 4bucA03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.55 | 26.0 | 3.79e-01 | 76.6% | 99.2% |
| 1gg4A01 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.54 | 27.0 | 3.80e-01 | 70.7% | 98.5% |
| 1iukA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 26.0 | 3.71e-01 | 72.1% | 97.1% |
| 3a9uA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 23.0 | 3.21e-01 | 73.8% | 81.6% |
| 2c42A02 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 27.0 | 3.53e-01 | 75.5% | 92.4% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.50 | 33.0 | 3.80e-01 | 71.0% | 87.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961834 | 2002.1.1.458 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF6610 | 0.79 | 62.0 | 6.65e-01 | 83.4% | 92.0% |
| 5049216 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.75 | 63.0 | 5.80e-01 | 86.2% | 86.5% |
| 4945925 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.75 | 62.0 | 5.66e-01 | 86.2% | 90.9% |
| 5047529 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.74 | 62.0 | 5.72e-01 | 86.2% | 92.1% |
| 4138803 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.74 | 62.0 | 5.74e-01 | 86.2% | 93.1% |
| 4979409 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 63.0 | 5.84e-01 | 86.9% | 94.3% |
| 4974100 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 62.0 | 5.91e-01 | 85.5% | 91.2% |
| 5054827 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.74 | 63.0 | 5.84e-01 | 87.6% | 86.2% |
| 4968912 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.73 | 62.0 | 5.69e-01 | 87.6% | 81.6% |
| 5034933 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.71 | 56.0 | 5.69e-01 | 86.2% | 82.1% |
| 5041417 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.70 | 54.0 | 5.52e-01 | 85.9% | 81.4% |
| 4963268 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.69 | 49.0 | 5.20e-01 | 86.2% | 78.9% |
| 4939842 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.69 | 42.0 | 4.80e-01 | 85.9% | 78.2% |
| 5045828 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 57.0 | 5.68e-01 | 86.9% | 92.3% |
| 4950469 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 43.0 | 4.78e-01 | 85.9% | 78.7% |
| 4648502 | 2002.1.1.66 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I | 0.67 | 49.0 | 5.48e-01 | 85.5% | 95.1% |
| 4936680 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.66 | 43.0 | 4.74e-01 | 86.2% | 78.7% |
| 4930897 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.66 | 52.0 | 5.28e-01 | 85.9% | 80.3% |
| 3980012 | 2002.1.1.50 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase | 0.66 | 56.0 | 5.68e-01 | 87.2% | 100.0% |
| 5072528 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.65 | 53.0 | 5.66e-01 | 83.8% | 100.0% |
| 5083314 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.65 | 52.0 | 5.28e-01 | 82.8% | 100.0% |
| 5007787 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.64 | 39.0 | 4.40e-01 | 86.2% | 76.9% |
| 4976669 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.64 | 54.0 | 5.34e-01 | 86.9% | 83.7% |
| 4941757 | 2002.1.1.154 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 | 0.63 | 51.0 | 4.87e-01 | 83.1% | 100.0% |
| 3969462 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 50.0 | 5.16e-01 | 82.1% | 99.3% |
| 4016156 | 2002.1.1.156 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fas1-AflB-like_hel | 0.61 | 56.0 | 4.51e-01 | 97.6% | 94.7% |
| 4990366 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.60 | 46.0 | 5.11e-01 | 83.8% | 97.8% |
| 4944840 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.57 | 45.0 | 5.00e-01 | 81.0% | 100.0% |
| 3505834 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.57 | 53.0 | 4.24e-01 | 98.3% | 57.5% |
| 4313457 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 40.0 | 4.52e-01 | 76.2% | 92.7% |
| 3480383 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 49.0 | 4.37e-01 | 94.8% | 89.4% |
| 5028484 | 2002.1.1.109 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NeuB | 0.54 | 43.0 | 4.38e-01 | 91.4% | 84.6% |
| 5042052 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.53 | 34.0 | 3.81e-01 | 83.8% | 80.5% |
| 5038480 | 7555.1.1.2 ↗ | a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like | 0.53 | 32.0 | 3.67e-01 | 82.8% | 78.6% |
| 5058563 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.52 | 27.0 | 3.62e-01 | 81.4% | 91.0% |
| 3959190 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 26.0 | 3.36e-01 | 83.1% | 83.0% |
| 4936263 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.50 | 36.0 | 3.95e-01 | 71.4% | 100.0% |
| 4598947 | 2007.25.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 | 0.50 | 19.0 | 3.14e-01 | 83.1% | 98.9% |