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YP_008059628.1
Arc-VirNC_021330__YP_008059628.1__M202-gp149__00066
Identity
- Accession:
- NC_021330 ↗
- Protein ID:
- YP_008059628.1 ↗
- Kingdom:
- archaea
Quality
86.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Hacavirus›
Haloarcula_californiae_tailed_virus_1
TaxID: 1273746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-49
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.68 | 51.0 | 3.94e-01 | 82.9% | 73.1% |
| 5djsA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 51.0 | 3.56e-01 | 87.8% | 30.8% |
| 3aleA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.64 | 50.0 | 3.71e-01 | 100.0% | 32.2% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.62 | 46.0 | 3.32e-01 | 87.8% | 40.6% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 44.0 | 4.14e-01 | 82.9% | 62.5% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 47.0 | 4.14e-01 | 97.6% | 77.3% |
| 2m45A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.68e-01 | 95.1% | 69.0% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.55 | 41.0 | 3.12e-01 | 85.4% | 66.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4278352 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.72 | 53.0 | 3.33e-01 | 82.9% | 61.3% |
| None | — | 0.65 | 52.0 | 4.54e-01 | 95.1% | 60.9% | |
| 5032065 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.63 | 47.0 | 3.29e-01 | 82.9% | 67.9% |
| 4872063 | 2485.1.1.9 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx | 0.56 | 42.0 | 3.48e-01 | 90.2% | 50.0% |