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YP_008059638.1

Arc-Vir

NC_021330__YP_008059638.1__M202-gp140__00076

Identity

Accession:
NC_021330 ↗
Protein ID:
YP_008059638.1 ↗
Kingdom:
archaea

Quality

60.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Hacavirus› Haloarcula_californiae_tailed_virus_1

TaxID: 1273746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-199
PDB
Domain cluster: rep: IMGVR_UViG_3300005939_000164-3300005939-Ga0075123_100016521__D2-78
D2 medium residues 265-312
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.73 63.0 3.87e-01 100.0% 86.0%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 52.0 4.79e-01 77.1% 71.4%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.73 62.0 3.77e-01 100.0% 61.4%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.72 60.0 3.76e-01 97.9% 54.3%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.71 60.0 3.71e-01 100.0% 68.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 48.0 4.47e-01 70.8% 57.4%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.71 60.0 3.66e-01 100.0% 63.2%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.71 50.0 4.11e-01 75.0% 46.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.70 60.0 3.69e-01 95.8% 55.0%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.70 59.0 3.64e-01 100.0% 41.7%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.69 52.0 3.81e-01 81.2% 46.8%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 56.0 3.53e-01 100.0% 74.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.67 51.0 4.93e-01 85.4% 81.5%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 55.0 3.84e-01 97.9% 61.0%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 58.0 3.51e-01 100.0% 38.5%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.66 51.0 4.03e-01 83.3% 73.5%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 56.0 3.46e-01 100.0% 37.2%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 53.0 3.28e-01 95.8% 69.0%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 51.0 4.25e-01 89.6% 94.5%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 55.0 3.29e-01 100.0% 60.6%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.66 54.0 3.55e-01 93.8% 96.4%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 49.0 3.91e-01 85.4% 88.9%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 56.0 3.36e-01 100.0% 28.8%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 54.0 3.32e-01 100.0% 38.0%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 4.47e-01 83.3% 69.2%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 54.0 3.39e-01 100.0% 65.6%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 54.0 3.37e-01 100.0% 53.9%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 54.0 3.38e-01 100.0% 48.5%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.63 47.0 3.94e-01 81.2% 88.1%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.62 39.0 3.64e-01 83.3% 50.0%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 44.0 2.81e-01 75.0% 82.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 3.71e-01 87.5% 42.1%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 46.0 3.67e-01 85.4% 89.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 3.95e-01 70.8% 77.4%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.61 50.0 4.09e-01 97.9% 76.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 47.0 3.50e-01 87.5% 66.7%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 46.0 3.68e-01 87.5% 75.9%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 49.0 3.00e-01 95.8% 31.9%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 45.0 3.56e-01 91.7% 96.7%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 42.0 3.28e-01 77.1% 92.1%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.58 46.0 3.51e-01 89.6% 96.6%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 40.0 3.98e-01 75.0% 76.0%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 45.0 3.45e-01 91.7% 92.5%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 48.0 3.58e-01 97.9% 85.4%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.63e-01 89.6% 20.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.71e-01 77.1% 64.2%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.43e-01 97.9% 48.2%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 46.0 2.92e-01 100.0% 26.2%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 43.0 3.28e-01 95.8% 82.3%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 42.0 3.15e-01 89.6% 85.2%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 42.0 3.39e-01 100.0% 95.2%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.21e-01 79.2% 92.3%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 37.0 2.95e-01 77.1% 95.7%
2uzzA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 42.0 2.84e-01 87.5% 75.4%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 2.90e-01 91.7% 95.9%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 38.0 3.75e-01 81.2% 81.8%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.51 37.0 2.66e-01 83.3% 28.8%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 37.0 3.33e-01 83.3% 54.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589569 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.71 53.0 4.95e-01 81.2% 73.3%
3215376 5.1.4.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.71 61.0 3.61e-01 100.0% 31.1%
3230503 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.71 55.0 3.71e-01 85.4% 22.6%
4014854 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.71 61.0 3.73e-01 100.0% 64.5%
4371937 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 53.0 3.22e-01 83.3% 92.9%
5643 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.69 52.0 4.57e-01 81.2% 83.1%
3714021 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.69 57.0 3.37e-01 100.0% 43.9%
3579710 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.68 50.0 3.95e-01 81.2% 37.1%
3456571 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 57.0 3.63e-01 100.0% 48.5%
3599752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 55.0 3.27e-01 93.8% 35.3%
4355548 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.67 57.0 3.33e-01 100.0% 27.8%
4674344 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 52.0 3.28e-01 89.6% 98.2%
3582941 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.67 52.0 4.22e-01 89.6% 64.0%
3687870 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 50.0 3.90e-01 87.5% 81.7%
3874056 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 47.0 4.58e-01 79.2% 69.1%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.49e-01 95.8% 77.8%
3993013 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.65 56.0 3.41e-01 100.0% 46.1%
4929797 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.65 49.0 4.59e-01 81.2% 72.9%
3538633 5.1.12.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › WD40 0.65 56.0 3.34e-01 100.0% 44.9%
3212890 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 55.0 3.49e-01 100.0% 33.7%
5057301 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 55.0 3.53e-01 100.0% 52.9%
3655121 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 54.0 3.18e-01 100.0% 50.5%
3326656 5.1.4.228 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glyoxal_oxid_N 0.64 54.0 3.16e-01 100.0% 25.9%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.64 53.0 3.14e-01 97.9% 38.9%
3621408 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.64 54.0 3.33e-01 100.0% 52.9%
3807776 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 54.0 3.30e-01 100.0% 51.4%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.64 47.0 4.02e-01 81.2% 62.5%
3709245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.11e-01 87.5% 52.9%
3257279 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.03e-01 100.0% 20.3%
5041686 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 51.0 3.72e-01 93.8% 78.6%
3700797 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.63 48.0 3.66e-01 85.4% 73.3%
3523657 5.1.4.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.63 49.0 3.02e-01 100.0% 46.4%
3616330 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.62 47.0 3.57e-01 87.5% 31.9%
3692403 5.1.4.378 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF27702 0.62 52.0 3.08e-01 100.0% 21.5%
3392759 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 51.0 3.12e-01 100.0% 40.0%
3987739 207.4.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CFSR 0.62 44.0 2.84e-01 77.1% 25.4%
3188259 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.61 44.0 3.58e-01 77.1% 95.8%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.78e-01 93.8% 82.6%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.61 43.0 3.79e-01 77.1% 81.3%
5054507 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 4.37e-01 95.8% 66.7%
4178829 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.60 44.0 3.40e-01 83.3% 91.2%
None — 0.60 49.0 3.04e-01 100.0% 45.7%
3693368 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.60 43.0 3.29e-01 77.1% 100.0%
3577993 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 50.0 3.29e-01 100.0% 71.7%
3301044 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.60 44.0 2.96e-01 81.2% 20.5%
3505083 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 48.0 2.99e-01 100.0% 54.1%
3992808 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.59 49.0 3.05e-01 95.8% 36.6%
3432796 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.59 50.0 4.30e-01 95.8% 66.3%
3622600 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 44.0 3.31e-01 83.3% 61.6%
3480636 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 47.0 2.78e-01 100.0% 27.9%
3675483 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.91e-01 100.0% 42.3%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.57 44.0 3.63e-01 100.0% 94.8%
3471746 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.57 45.0 3.22e-01 91.7% 28.2%
3587919 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.57 46.0 2.85e-01 97.9% 32.8%
4027119 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 38.0 2.90e-01 75.0% 79.3%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.53 36.0 2.90e-01 100.0% 34.0%