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YP_008059650.1
Arc-VirNC_021330__YP_008059650.1__M202-gp130__00088
Identity
- Accession:
- NC_021330 ↗
- Protein ID:
- YP_008059650.1 ↗
- Kingdom:
- archaea
Quality
75.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Hacavirus›
Haloarcula_californiae_tailed_virus_1
TaxID: 1273746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-62
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.89 | 61.0 | 4.46e-01 | 71.7% | 29.7% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.82 | 67.0 | 4.06e-01 | 86.8% | 29.0% |
| 4ki9A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.80 | 58.0 | 4.04e-01 | 75.5% | 73.9% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.78 | 60.0 | 4.90e-01 | 83.0% | 57.3% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.77 | 62.0 | 5.64e-01 | 86.8% | 79.7% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.73 | 55.0 | 3.80e-01 | 79.2% | 89.0% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.72 | 51.0 | 4.24e-01 | 75.5% | 44.0% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 58.0 | 5.40e-01 | 92.5% | 77.9% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.70 | 56.0 | 3.71e-01 | 86.8% | 39.8% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.70 | 54.0 | 4.62e-01 | 86.8% | 52.2% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.69 | 43.0 | 3.38e-01 | 73.6% | 29.2% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.67 | 56.0 | 4.52e-01 | 100.0% | 74.6% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.27e-01 | 77.4% | 61.6% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.65 | 48.0 | 3.61e-01 | 88.7% | 32.3% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.64 | 55.0 | 3.90e-01 | 100.0% | 50.3% |
| 3veaA02 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.61 | 44.0 | 4.45e-01 | 79.2% | 80.8% |
| 2cu7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 45.0 | 4.57e-01 | 84.9% | 88.0% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 43.0 | 3.58e-01 | 77.4% | 60.2% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.53 | 47.0 | 3.90e-01 | 100.0% | 77.9% |
| 4mozD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 2.62e-01 | 88.7% | 22.7% |
| 2w00A05 | 1.20.58.2040 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 43.0 | 3.44e-01 | 88.7% | 55.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3678066 | 101.1.11.40 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1677 | 0.84 | 59.0 | 5.36e-01 | 73.6% | 55.7% |
| 4150602 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.84 | 63.0 | 3.86e-01 | 81.1% | 13.9% |
| 3208982 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.83 | 59.0 | 6.31e-01 | 75.5% | 93.3% |
| 4102625 | 132.3.1.1 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD | 0.83 | 62.0 | 5.94e-01 | 79.2% | 100.0% |
| 3687321 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.83 | 55.0 | 6.15e-01 | 71.7% | 92.5% |
| 3469102 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.82 | 58.0 | 4.39e-01 | 81.1% | 33.3% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.82 | 71.0 | 5.54e-01 | 96.2% | 64.5% |
| 5005755 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.81 | 62.0 | 4.07e-01 | 83.0% | 21.4% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.80 | 62.0 | 5.35e-01 | 83.0% | 67.5% |
| 3686534 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.80 | 60.0 | 6.44e-01 | 79.2% | 93.3% |
| 3223617 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.79 | 58.0 | 4.04e-01 | 83.0% | 25.5% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.78 | 58.0 | 4.72e-01 | 81.1% | 54.0% |
| 4048893 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.77 | 60.0 | 5.42e-01 | 83.0% | 78.6% |
| 3636418 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.75 | 62.0 | 3.80e-01 | 88.7% | 39.2% |
| 3199235 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.75 | 58.0 | 3.72e-01 | 84.9% | 18.8% |
| 5023675 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.75 | 55.0 | 4.09e-01 | 79.2% | 31.6% |
| 4467072 | 101.1.9.142 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2015 | 0.75 | 52.0 | 4.50e-01 | 71.7% | 53.8% |
| 4360066 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 52.0 | 3.96e-01 | 81.1% | 31.2% |
| 3796255 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.75 | 51.0 | 5.44e-01 | 73.6% | 84.4% |
| 5079682 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.74 | 54.0 | 5.44e-01 | 100.0% | 75.9% |
| 3341091 | 101.35.1.6 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 | 0.74 | 54.0 | 5.12e-01 | 86.8% | 64.6% |
| 3626631 | 386.1.1.25 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 | 0.74 | 55.0 | 5.66e-01 | 84.9% | 84.0% |
| 5036473 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 57.0 | 4.36e-01 | 83.0% | 36.7% |
| 3689157 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 55.0 | 3.93e-01 | 83.0% | 27.7% |
| 4948263 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.73 | 56.0 | 3.73e-01 | 83.0% | 23.4% |
| 3746790 | 386.1.1.25 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 | 0.73 | 52.0 | 5.08e-01 | 79.2% | 68.3% |
| 4988977 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 50.0 | 5.48e-01 | 79.2% | 90.7% |
| 4943719 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 54.0 | 4.19e-01 | 83.0% | 36.7% |
| 3254140 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.70 | 56.0 | 3.80e-01 | 84.9% | 90.3% |
| 3886999 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.70 | 46.0 | 5.16e-01 | 71.7% | 90.0% |
| 3238586 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.36e-01 | 96.2% | 75.7% |
| 3799156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 51.0 | 4.62e-01 | 81.1% | 60.8% |
| 5051504 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.66 | 52.0 | 4.61e-01 | 84.9% | 61.3% |
| 5027452 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 55.0 | 3.98e-01 | 94.3% | 36.8% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.65 | 52.0 | 5.15e-01 | 88.7% | 100.0% |
| 4954174 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.65 | 52.0 | 4.41e-01 | 90.6% | 52.2% |
| 4162420 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.65 | 50.0 | 3.81e-01 | 83.0% | 35.2% |
| 5047497 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.65 | 47.0 | 4.45e-01 | 81.1% | 64.6% |
| 4021339 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.63 | 56.0 | 3.18e-01 | 96.2% | 36.7% |
| 4956188 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.63 | 47.0 | 3.27e-01 | 81.1% | 31.4% |
| 3212935 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.62 | 46.0 | 4.45e-01 | 83.0% | 71.7% |
| 3577773 | 2488.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot | 0.60 | 39.0 | 2.60e-01 | 75.5% | 15.9% |
| 3400021 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.57 | 51.0 | 3.50e-01 | 100.0% | 35.1% |
| 5083489 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.55 | 42.0 | 3.09e-01 | 90.6% | 38.8% |
| 4012761 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 46.0 | 2.97e-01 | 96.2% | 73.7% |