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YP_008059658.1

Arc-Vir

NC_021330__YP_008059658.1__M202-gp122__00096

Identity

Accession:
NC_021330 ↗
Protein ID:
YP_008059658.1 ↗
Kingdom:
archaea

Quality

62.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14520.13 best HHH_5 40.6 3.90e-10 96.1% 80.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.93 85.0 8.20e-01 100.0% 93.0%
2i1qA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.91 81.0 7.59e-01 98.0% 83.9%
2va8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.84 74.0 7.17e-01 100.0% 89.3%
1u9lB00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.83 74.0 6.66e-01 100.0% 74.3%
3mabA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.83 74.0 6.24e-01 100.0% 70.6%
4dezA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.80 72.0 6.38e-01 100.0% 70.8%
5tt5A05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.77 67.0 5.89e-01 100.0% 76.6%
2dl0A01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.77 66.0 6.39e-01 100.0% 98.3%
2q0zX02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.76 65.0 6.30e-01 100.0% 89.7%
2kivA02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.75 64.0 6.17e-01 100.0% 93.3%
4nj8A01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.74 63.0 6.12e-01 100.0% 100.0%
4i2aA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.74 60.0 5.73e-01 100.0% 78.0%
1x9xA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.73 61.0 5.83e-01 100.0% 91.9%
6qwvH02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.73 61.0 5.97e-01 98.0% 96.6%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.72 60.0 5.50e-01 100.0% 85.7%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.62 43.0 3.43e-01 74.5% 46.4%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.16e-01 92.2% 88.6%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 2.82e-01 92.2% 27.0%
5jnmA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 39.0 2.85e-01 90.2% 37.9%
3rc3A01 1.10.1740.140 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 39.0 3.12e-01 82.4% 67.0%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 2.80e-01 94.1% 93.7%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061085 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.92 85.0 8.00e-01 100.0% 88.3%
5051996 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.92 85.0 7.18e-01 100.0% 66.3%
4470895 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.92 84.0 8.24e-01 100.0% 96.4%
4968089 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.92 84.0 7.94e-01 100.0% 88.3%
4927990 4156.1.1.6 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.92 84.0 5.20e-01 100.0% 20.9%
4932604 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.91 84.0 7.10e-01 100.0% 66.3%
5034266 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.91 84.0 7.89e-01 100.0% 88.3%
4152195 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.91 83.0 7.21e-01 100.0% 70.7%
4945133 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.91 83.0 7.70e-01 100.0% 84.1%
1305678 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.90 75.0 7.20e-01 90.2% 82.8%
5052765 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.89 82.0 7.28e-01 100.0% 75.7%
3410797 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.89 81.0 7.70e-01 100.0% 91.7%
3748615 102.5.1.9 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 0.89 82.0 6.78e-01 100.0% 63.5%
5076923 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.89 80.0 7.20e-01 100.0% 75.7%
5026932 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.89 81.0 7.92e-01 100.0% 94.5%
4944083 102.1.1.182 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 0.89 81.0 7.20e-01 100.0% 75.7%
3998341 102.5.1.9 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 0.89 80.0 7.19e-01 100.0% 77.1%
4234483 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.89 80.0 7.59e-01 100.0% 88.3%
4946797 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.89 80.0 7.37e-01 100.0% 81.5%
4995116 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.88 79.0 7.73e-01 100.0% 96.4%
4944206 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.87 78.0 7.44e-01 100.0% 88.3%
5076446 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.87 79.0 6.91e-01 100.0% 70.7%
4963018 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.87 79.0 7.70e-01 100.0% 98.2%
5081795 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.87 78.0 7.03e-01 100.0% 75.7%
3554607 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.87 78.0 6.69e-01 100.0% 68.8%
4672295 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.87 78.0 6.54e-01 100.0% 62.4%
4969952 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.87 78.0 7.61e-01 100.0% 96.4%
3929386 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.87 78.0 7.00e-01 100.0% 78.6%
4149240 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.86 78.0 6.96e-01 100.0% 80.0%
5039718 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 77.0 7.51e-01 100.0% 96.4%
3189901 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.86 77.0 6.95e-01 100.0% 80.0%
5068422 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 77.0 6.44e-01 100.0% 62.4%
5039717 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 76.0 6.86e-01 100.0% 75.7%
4927478 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 78.0 6.95e-01 100.0% 75.7%
4975986 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 77.0 6.88e-01 100.0% 75.7%
4238568 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.86 76.0 6.85e-01 100.0% 75.7%
5059290 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 76.0 7.47e-01 100.0% 96.4%
4917898 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.85 77.0 6.96e-01 100.0% 77.9%
4940020 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 75.0 6.26e-01 100.0% 59.6%
5039719 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 75.0 7.14e-01 100.0% 86.7%
5045952 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 75.0 6.63e-01 100.0% 71.6%
3573558 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.85 76.0 6.66e-01 100.0% 85.3%
4041283 102.5.1.1 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.84 75.0 7.12e-01 100.0% 88.3%
4977889 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.84 76.0 6.81e-01 100.0% 80.0%
4975251 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.84 74.0 7.07e-01 100.0% 88.3%
4979223 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.84 75.0 7.10e-01 100.0% 88.3%
5060570 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.84 75.0 6.28e-01 100.0% 67.1%
3945915 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.84 74.0 6.24e-01 100.0% 62.4%
None 0.84 73.0 7.00e-01 100.0% 88.3%
4199114 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 74.0 7.02e-01 100.0% 88.3%
5060034 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 74.0 6.54e-01 100.0% 75.3%
5056035 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 73.0 6.98e-01 100.0% 86.7%
3995293 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 76.0 6.74e-01 100.0% 88.6%
3973085 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 73.0 6.95e-01 100.0% 88.3%
4928721 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 73.0 6.60e-01 100.0% 75.7%
3276791 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 74.0 7.03e-01 100.0% 90.0%
5061478 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.82 73.0 6.55e-01 100.0% 75.7%
4086283 102.1.1.23 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH 0.82 72.0 6.31e-01 100.0% 66.7%
4965217 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.82 72.0 6.54e-01 100.0% 75.7%
3283042 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 73.0 6.94e-01 100.0% 91.7%
5040400 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.82 72.0 6.86e-01 100.0% 86.7%
4946451 102.1.1.182 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 0.82 72.0 6.48e-01 100.0% 87.1%
5018343 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.81 71.0 6.79e-01 100.0% 83.3%
None 0.81 71.0 6.79e-01 100.0% 83.3%
4673594 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 71.0 6.76e-01 100.0% 83.3%
3184108 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.81 71.0 6.80e-01 100.0% 88.3%
None 0.81 71.0 6.95e-01 100.0% 90.9%
5061691 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 70.0 6.71e-01 100.0% 93.3%
4981272 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 66.0 6.51e-01 92.2% 92.7%
4668260 102.1.1.99 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.80 71.0 4.80e-01 100.0% 30.0%
4949725 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 70.0 6.37e-01 100.0% 74.3%
4113412 102.1.1.100 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.80 70.0 6.54e-01 100.0% 90.5%
3390495 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 69.0 6.63e-01 100.0% 85.0%
4508617 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.79 69.0 6.73e-01 100.0% 90.9%
4353086 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.79 68.0 4.67e-01 100.0% 30.0%
4241523 102.1.1.100 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.79 69.0 6.09e-01 100.0% 76.0%
3446679 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.79 67.0 6.41e-01 100.0% 90.0%
3932442 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.78 67.0 6.15e-01 100.0% 77.1%
4332374 102.1.1.79 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.78 67.0 4.62e-01 100.0% 30.0%
4032279 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.78 67.0 6.39e-01 100.0% 83.3%
3894996 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.77 67.0 5.81e-01 100.0% 72.5%
4946582 102.1.1.183 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_C 0.77 66.0 6.14e-01 100.0% 76.9%
3335755 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.77 65.0 6.25e-01 100.0% 90.0%
3551495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 67.0 6.40e-01 100.0% 86.7%
3865559 592.1.1.0 alpha arrays › PWI domain-like › PWI domain › PWI domain 0.77 66.0 6.35e-01 100.0% 88.3%
3495288 102.1.1.16 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.76 66.0 5.86e-01 100.0% 73.3%
3668692 102.1.1.51 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.76 65.0 6.13e-01 100.0% 78.5%
3626282 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.76 65.0 5.59e-01 100.0% 63.5%
5073407 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.76 65.0 5.97e-01 100.0% 79.7%
4031661 102.1.1.79 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.75 65.0 4.43e-01 100.0% 27.9%
4031699 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 62.0 6.11e-01 100.0% 89.1%
4285151 102.1.1.9 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_A_CTD 0.74 63.0 5.90e-01 100.0% 84.6%
3617542 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.73 62.0 5.97e-01 100.0% 86.7%
2796472 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 61.0 5.76e-01 100.0% 79.4%
3919158 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 60.0 5.75e-01 100.0% 93.3%
365854 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.69 58.0 5.56e-01 100.0% 85.2%
3401793 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 58.0 5.54e-01 100.0% 96.7%
D2 high residues 61-157
PDB