YP_008059681.1

Arc-Vir

NC_021330__YP_008059681.1__M202-gp099__00119

Identity

Accession:: NC_021330 ↗
Protein ID:: YP_008059681.1 ↗
Kingdom:: archaea

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Druskaviridae› Hacavirus› Haloarcula_californiae_tailed_virus_1

TaxID: 1273746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qe7G01	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.73	42.0	3.63e-01	100.0%	38.1%
7ymiZ01	1.10.287.740	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre	0.71	40.0	4.27e-01	100.0%	62.1%
3czxA00	3.40.630.40	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases	0.63	55.0	4.02e-01	98.5%	94.0%
3r84B00	6.10.280.160	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22	0.58	37.0	3.47e-01	100.0%	51.2%
1zb1A00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.58	43.0	2.74e-01	83.1%	31.6%
2yveB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	45.0	3.29e-01	96.9%	32.6%
1ev7A01	3.40.600.10	Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II	0.55	39.0	2.89e-01	96.9%	28.7%
2vf7B01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	40.0	2.58e-01	78.5%	20.4%
1nf1A01	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.55	41.0	3.81e-01	81.5%	78.3%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	38.0	3.36e-01	75.4%	94.1%
2ke4A00	6.10.140.470	Special › Helix non-globular › Helix Hairpins ›	0.54	37.0	3.35e-01	100.0%	50.0%
6al9B00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.53	37.0	3.37e-01	100.0%	53.8%
2wauA01	1.20.1310.20	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain	0.53	47.0	3.54e-01	100.0%	51.6%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.52	44.0	3.78e-01	100.0%	59.6%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.52	36.0	3.53e-01	100.0%	64.9%
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.51	38.0	3.13e-01	80.0%	87.2%
3g80A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.51	35.0	3.45e-01	100.0%	65.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4070346	192.8.1.343 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Val_tRNA-synt_C	0.67	43.0	4.37e-01	100.0%	66.2%
3961347	150.5.1.53 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE	0.64	43.0	3.90e-01	100.0%	52.9%
2754400	301.6.1.1 ↗	a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C	0.61	45.0	3.20e-01	100.0%	25.0%
3277724	150.5.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100	0.58	40.0	3.60e-01	100.0%	50.5%
3234270	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.56	42.0	3.87e-01	100.0%	61.2%
3642946	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.56	48.0	4.45e-01	93.8%	85.0%
3469007	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.55	48.0	4.37e-01	95.4%	80.0%
3669993	142.1.1.22 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C	0.55	48.0	4.39e-01	96.9%	80.0%