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YP_008059698.1

Arc-Vir

NC_021330__YP_008059698.1__M202-gp083__00136

Identity

Accession:
NC_021330 ↗
Protein ID:
YP_008059698.1 ↗
Kingdom:
archaea

Quality

72.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 38.0 3.89e-01 75.8% 46.9%
1rzuB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 41.0 2.71e-01 74.2% 14.1%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 45.0 4.34e-01 78.8% 59.5%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 37.0 3.36e-01 74.2% 39.3%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 43.0 4.30e-01 86.4% 62.7%
5ajqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 38.0 3.50e-01 81.8% 41.9%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 39.0 3.47e-01 83.3% 39.6%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 38.0 3.86e-01 84.8% 55.2%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 39.0 3.46e-01 84.8% 40.4%
3f3zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 36.0 3.37e-01 80.3% 42.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 38.0 4.00e-01 74.2% 60.7%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.65 44.0 3.73e-01 97.0% 40.2%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.65 41.0 4.73e-01 78.8% 95.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.29e-01 97.0% 64.0%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.63 41.0 3.25e-01 90.9% 32.8%
2w4oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 35.0 3.38e-01 81.8% 46.8%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 36.0 3.11e-01 81.8% 35.2%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 4.48e-01 83.3% 77.4%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.51e-01 95.5% 81.0%
6td3B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 36.0 3.09e-01 75.8% 35.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 4.32e-01 83.3% 74.2%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 34.0 3.19e-01 72.7% 40.2%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 45.0 2.96e-01 80.3% 29.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 37.0 4.23e-01 83.3% 87.2%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 34.0 3.11e-01 81.8% 39.6%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 3.75e-01 74.2% 56.5%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 35.0 2.56e-01 77.3% 21.2%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 41.0 3.60e-01 74.2% 76.5%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 52.0 4.25e-01 100.0% 87.8%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.58 49.0 4.09e-01 98.5% 52.5%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 4.12e-01 100.0% 88.1%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 48.0 3.79e-01 100.0% 75.0%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 34.0 3.25e-01 80.3% 49.4%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.56 47.0 4.05e-01 95.5% 64.8%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.54e-01 100.0% 42.6%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 3.97e-01 100.0% 82.8%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.55 43.0 3.63e-01 84.8% 82.9%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 47.0 3.24e-01 95.5% 33.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.31e-01 95.5% 86.1%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 3.35e-01 97.0% 36.4%
3p1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 30.0 2.60e-01 81.8% 33.0%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.41e-01 100.0% 69.2%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 39.0 3.14e-01 86.4% 85.8%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.81 40.0 4.43e-01 77.3% 58.2%
3927948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 42.0 4.00e-01 74.2% 45.3%
4949552 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 51.0 5.05e-01 80.3% 64.3%
5047299 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 46.0 5.67e-01 78.8% 100.0%
3820070 5.1.2.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.74 54.0 3.69e-01 100.0% 22.7%
4418351 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.74 55.0 4.72e-01 80.3% 55.2%
4927858 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 46.0 4.93e-01 87.9% 76.4%
4025190 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.73 51.0 5.52e-01 93.9% 89.1%
5075670 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 45.0 5.21e-01 83.3% 95.3%
3733732 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 61.0 4.08e-01 100.0% 24.3%
3606500 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.72 47.0 4.90e-01 80.3% 73.3%
5041400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 47.0 5.46e-01 77.3% 100.0%
4379563 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.70 43.0 4.95e-01 78.8% 91.1%
4991059 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 47.0 5.20e-01 84.8% 94.0%
4929725 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.69 44.0 5.03e-01 83.3% 95.6%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.86e-01 78.8% 93.3%
3390566 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 42.0 3.67e-01 81.8% 42.0%
3496292 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 43.0 4.63e-01 84.8% 78.2%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.67 54.0 4.56e-01 90.9% 54.3%
3510694 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 46.0 4.08e-01 72.7% 51.6%
3934685 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 47.0 4.29e-01 74.2% 60.0%
4938265 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.66 45.0 4.68e-01 100.0% 80.0%
4927674 814.1.1.0 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.65 57.0 4.49e-01 100.0% 87.5%
4999817 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 41.0 4.70e-01 71.2% 93.3%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.89e-01 92.4% 83.3%
3939715 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 45.0 2.91e-01 100.0% 15.3%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.64 45.0 4.88e-01 92.4% 89.1%
4930408 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 54.0 4.72e-01 97.0% 89.0%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.62 54.0 4.73e-01 97.0% 66.3%
3390463 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 45.0 4.62e-01 84.8% 80.0%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 44.0 4.11e-01 93.9% 60.0%
3749979 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 41.0 3.73e-01 74.2% 51.1%
3173920 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 54.0 3.42e-01 100.0% 32.1%
3582034 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.61 44.0 2.81e-01 100.0% 15.5%
4863266 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.61 42.0 4.30e-01 93.9% 73.8%
4002526 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 43.0 2.80e-01 100.0% 15.5%
3201592 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 34.0 2.37e-01 80.3% 15.9%
3902438 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 45.0 3.93e-01 97.0% 52.4%
4928905 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 54.0 3.90e-01 100.0% 59.4%
3217506 9.1.1.50 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.60 51.0 4.16e-01 93.9% 69.2%
4528707 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 41.0 3.51e-01 72.7% 53.6%
4995934 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 54.0 3.34e-01 100.0% 29.6%
3550395 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.60 42.0 3.82e-01 74.2% 57.8%
3784940 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.59 43.0 3.17e-01 77.3% 47.4%
4102022 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.59 49.0 3.05e-01 90.9% 43.8%
3988064 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 46.0 4.61e-01 92.4% 82.9%
5022599 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.49e-01 72.7% 50.5%
4479020 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.58 43.0 4.00e-01 84.8% 61.2%
None 0.58 48.0 3.09e-01 90.9% 45.2%
4491369 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.58 48.0 3.09e-01 90.9% 41.6%
4531826 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.58 49.0 3.14e-01 92.4% 45.1%
3781077 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 41.0 3.58e-01 80.3% 48.5%
None 0.57 47.0 2.81e-01 90.9% 47.3%
3988706 243.3.1.13 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.57 44.0 4.40e-01 92.4% 82.9%
3229482 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.56 43.0 3.07e-01 83.3% 75.1%
3618132 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 38.0 2.50e-01 95.5% 14.2%
4315975 243.3.1.68 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY, FTP 0.56 46.0 3.62e-01 100.0% 63.6%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.56 42.0 2.51e-01 80.3% 19.6%
3961918 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.56 46.0 2.96e-01 90.9% 76.9%
4035868 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.55 48.0 3.92e-01 100.0% 79.2%
3386770 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.55 46.0 3.56e-01 98.5% 71.5%
3179623 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 41.0 2.63e-01 89.4% 16.3%
3491028 2003.1.2.34 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase 0.55 46.0 2.75e-01 92.4% 59.6%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.55 48.0 3.20e-01 100.0% 28.3%
4673289 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 47.0 3.52e-01 100.0% 90.9%
3631383 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.54 49.0 3.66e-01 100.0% 81.9%
3414594 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.53 38.0 2.48e-01 90.9% 14.5%
3498572 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 41.0 2.67e-01 86.4% 45.8%
4970357 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.53 45.0 2.63e-01 100.0% 21.1%
3198158 206.1.1.83 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr 0.52 41.0 2.61e-01 89.4% 16.2%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.51 44.0 3.97e-01 100.0% 83.2%
3924711 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.49e-01 90.9% 17.2%