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YP_008059705.1
Arc-VirNC_021330__YP_008059705.1__M202-gp077__00143
Identity
- Accession:
- NC_021330 ↗
- Protein ID:
- YP_008059705.1 ↗
- Kingdom:
- archaea
Quality
92.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Hacavirus›
Haloarcula_californiae_tailed_virus_1
TaxID: 1273746
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54_116-126_169-180
Domain cluster:
representative
D2
medium
residues 55-115_127-168
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 33.0 | 3.37e-01 | 86.4% | 55.0% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 3.29e-01 | 76.7% | 57.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952986 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.66 | 31.0 | 3.70e-01 | 77.7% | 65.7% |
| 5050401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 36.0 | 3.66e-01 | 86.4% | 59.0% |
| 5009701 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.52 | 30.0 | 3.42e-01 | 87.4% | 80.0% |
| 3940081 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 35.0 | 2.81e-01 | 71.8% | 82.6% |
| 3718665 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 32.0 | 3.43e-01 | 89.3% | 76.5% |