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YP_008060022.1

Arc-Vir

NC_021335__YP_008060022.1__M193-gp038__00038

Identity

Accession:
NC_021335 ↗
Protein ID:
YP_008060022.1 ↗
Kingdom:
archaea

Quality

81.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: representative
D2 medium residues 83-250
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d4lA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.82 47.0 5.83e-01 78.0% 89.6%
3ecyA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.81 48.0 5.65e-01 88.1% 83.2%
6lj3A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.78 45.0 4.96e-01 76.2% 69.0%
2bsyA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.78 43.0 5.42e-01 78.0% 89.2%
5y5qC00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 46.0 5.04e-01 79.8% 72.1%
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 43.0 4.59e-01 78.6% 63.3%
3h6xB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.75 48.0 5.40e-01 81.0% 82.3%
3t64A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.75 46.0 5.08e-01 75.6% 75.4%
1euwA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 46.0 5.12e-01 79.8% 76.5%
1dunA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 47.0 5.45e-01 82.7% 88.3%
2yzjA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.69 47.0 5.16e-01 76.8% 83.6%
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.68 48.0 5.02e-01 84.5% 78.4%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.67 47.0 4.75e-01 78.0% 71.0%
3km3B00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.63 45.0 4.65e-01 76.2% 77.6%
1pkhB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.63 48.0 4.72e-01 78.0% 82.3%
2r9qA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.63 47.0 4.82e-01 77.4% 85.3%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 25.0 3.68e-01 76.2% 87.3%
1xs1A00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.60 46.0 4.35e-01 78.0% 71.0%
2dpkA01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.60 35.0 4.03e-01 76.2% 78.3%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 30.0 3.79e-01 76.2% 82.5%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.58 32.0 3.55e-01 76.8% 65.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 29.0 4.01e-01 72.6% 100.0%
5dmyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 4.20e-01 74.4% 87.6%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 37.0 3.68e-01 77.4% 60.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 30.0 3.50e-01 71.4% 70.0%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 28.0 3.55e-01 73.2% 80.2%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 29.0 3.62e-01 73.2% 83.3%
3cxeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 30.0 3.67e-01 77.4% 87.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 34.0 4.05e-01 75.0% 95.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 37.0 4.32e-01 76.2% 99.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 27.0 3.69e-01 73.2% 98.7%
4rsvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 26.0 3.34e-01 73.2% 82.2%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 31.0 3.86e-01 74.4% 99.0%
3n6yA01 2.60.40.2390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.68e-01 73.2% 86.6%
2kutA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.57e-01 70.2% 86.8%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.40e-01 72.6% 78.6%
3bfqG00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.51 37.0 4.11e-01 74.4% 94.7%
5z9sA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.80e-01 72.6% 88.6%
3up1B01 2.60.40.1870 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 25.0 3.20e-01 72.6% 81.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
162469 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.81 47.0 5.69e-01 79.2% 85.1%
4966568 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 45.0 4.91e-01 78.0% 67.9%
4147159 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.76 47.0 5.40e-01 81.0% 82.4%
367299 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.76 42.0 5.11e-01 78.6% 81.2%
4664979 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.75 47.0 5.29e-01 80.4% 80.0%
27204 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.75 46.0 5.12e-01 79.8% 76.1%
4995632 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.75 47.0 5.09e-01 79.8% 74.3%
4862744 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.74 47.0 5.27e-01 79.2% 80.3%
27230 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.74 47.0 5.47e-01 82.7% 89.1%
3590216 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.73 47.0 5.02e-01 80.4% 72.7%
4656379 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.71 47.0 5.26e-01 84.5% 83.0%
5062200 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.71 46.0 4.66e-01 78.0% 65.9%
4014287 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.71 47.0 5.21e-01 84.5% 83.6%
4080854 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.70 46.0 4.87e-01 78.0% 73.3%
4599976 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.70 48.0 5.30e-01 84.5% 83.6%
2709093 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.69 46.0 4.93e-01 84.5% 75.3%
4876557 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.69 47.0 5.13e-01 83.9% 82.1%
999206 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.69 48.0 4.95e-01 78.0% 75.3%
4130984 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.68 48.0 5.04e-01 84.5% 77.9%
2534305 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.68 46.0 4.91e-01 83.9% 77.0%
3474655 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 34.0 4.43e-01 70.8% 84.2%
4059745 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.68 46.0 5.16e-01 79.2% 85.9%
5056309 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 47.0 4.81e-01 78.0% 75.6%
4041362 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.66 47.0 4.83e-01 78.0% 76.7%
None 0.65 47.0 4.66e-01 78.0% 70.3%
5042019 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.65 47.0 4.76e-01 78.0% 75.2%
5022441 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.65 47.0 4.93e-01 78.6% 81.2%
4984664 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.64 47.0 4.60e-01 78.0% 69.4%
5054511 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.64 46.0 4.62e-01 78.0% 70.9%
4967931 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.64 44.0 4.56e-01 78.0% 73.1%
None 0.64 47.0 4.69e-01 78.0% 73.5%
4136503 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.63 46.0 4.39e-01 78.0% 65.3%
1247195 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.63 47.0 5.13e-01 92.3% 93.4%
4269280 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.63 46.0 4.59e-01 78.0% 72.6%
5049748 70.2.1.1 beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.63 48.0 5.03e-01 84.5% 85.8%
None 0.63 47.0 4.48e-01 78.0% 67.4%
4075672 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 46.0 4.39e-01 78.6% 66.3%
3241925 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.62 36.0 4.21e-01 76.2% 80.9%
None 0.62 46.0 4.42e-01 78.0% 66.2%
5058553 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 35.0 4.24e-01 73.2% 85.7%
4959655 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.62 34.0 4.18e-01 75.0% 83.8%
None 0.62 45.0 4.37e-01 78.6% 66.3%
3960338 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.62 46.0 4.44e-01 78.0% 67.9%
3500619 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.62 36.0 4.24e-01 76.8% 82.6%
4993749 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 45.0 4.46e-01 78.0% 70.6%
4629365 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.62 46.0 4.34e-01 78.0% 64.8%
3256286 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.61 46.0 4.62e-01 78.0% 75.9%
5031214 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.61 46.0 4.44e-01 78.0% 70.0%
5068130 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.61 46.0 4.53e-01 78.0% 73.7%
4937229 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.61 46.0 4.37e-01 78.0% 67.2%
4052918 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.61 46.0 4.36e-01 78.0% 70.3%
None 0.60 46.0 4.35e-01 78.0% 70.3%
5043954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 36.0 4.17e-01 76.2% 81.7%
4987213 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 34.0 4.35e-01 73.2% 100.0%
None 0.60 46.0 4.48e-01 78.0% 72.8%
4963366 11.1.1.1424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.60 34.0 4.06e-01 73.8% 82.7%
5044786 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 33.0 3.82e-01 76.2% 73.9%
5067824 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.60 46.0 4.25e-01 78.0% 70.2%
4989218 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.60 43.0 4.67e-01 75.6% 85.5%
3551050 10.32.1.41 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.60 33.0 3.67e-01 77.4% 66.9%
5061159 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 37.0 4.33e-01 76.8% 86.7%
4981624 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 34.0 4.02e-01 74.4% 82.7%
4989774 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 36.0 4.20e-01 76.2% 84.2%
3223695 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.59 33.0 3.68e-01 73.8% 68.5%
4950854 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 31.0 3.98e-01 76.2% 91.1%
3517685 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.59 34.0 3.93e-01 74.4% 80.0%
4959654 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.59 33.0 3.97e-01 75.0% 84.8%
3217258 11.1.1.952 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_1st 0.57 30.0 3.79e-01 76.2% 86.3%
5054044 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 31.0 4.03e-01 76.2% 100.0%
5041937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 33.0 4.00e-01 73.8% 89.5%
3995446 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.56 36.0 3.62e-01 80.4% 61.1%
3927336 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.56 33.0 3.65e-01 76.2% 70.4%
5030167 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.94e-01 73.8% 87.5%
3517099 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.53 28.0 3.42e-01 73.2% 82.0%
3924928 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 29.0 3.49e-01 72.0% 82.9%
2845396 11.1.1.182 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.52 37.0 4.01e-01 72.6% 89.9%
5056360 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 30.0 3.76e-01 74.4% 100.0%