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YP_008060033.1

Arc-Vir

NC_021335__YP_008060033.1__M193-gp049__00049

Identity

Accession:
NC_021335 ↗
Protein ID:
YP_008060033.1 ↗
Kingdom:
archaea

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Mincapvirus› Halorubrum_tailed_phage_7

TaxID: 2847108

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-38
PDB
Domain cluster: representative
CATH (75)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.79 66.0 5.29e-01 100.0% 52.0%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.78 64.0 4.31e-01 100.0% 25.2%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.77 66.0 4.71e-01 100.0% 62.4%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.77 63.0 3.99e-01 100.0% 20.7%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 61.0 5.09e-01 100.0% 57.1%
3kn3B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.76 61.0 4.33e-01 100.0% 30.8%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.76 59.0 5.07e-01 100.0% 58.2%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.76 61.0 5.07e-01 100.0% 63.4%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.75 59.0 4.36e-01 100.0% 34.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.75 63.0 4.59e-01 100.0% 60.0%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.73 60.0 3.53e-01 100.0% 42.9%
2jx2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.72 58.0 4.51e-01 100.0% 49.4%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.72 59.0 4.24e-01 100.0% 61.9%
1z8fA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.72 56.0 4.86e-01 97.1% 82.5%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.72 58.0 5.13e-01 100.0% 69.0%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 55.0 3.62e-01 100.0% 20.2%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 56.0 4.44e-01 97.1% 54.3%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.70 56.0 3.64e-01 100.0% 39.8%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.70 56.0 3.93e-01 100.0% 29.2%
3k0bA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 57.0 3.67e-01 100.0% 19.1%
1ufwA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.69 56.0 4.23e-01 100.0% 54.7%
2eu9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 55.0 4.18e-01 100.0% 51.5%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 56.0 3.19e-01 100.0% 8.4%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 56.0 4.64e-01 100.0% 68.1%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.69 55.0 4.54e-01 100.0% 54.8%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 56.0 4.49e-01 100.0% 68.4%
3jb9a02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.68 53.0 4.61e-01 97.1% 61.9%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 56.0 4.49e-01 97.1% 61.3%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 52.0 3.58e-01 100.0% 28.0%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 54.0 3.51e-01 100.0% 19.3%
3anqD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 53.0 4.09e-01 100.0% 48.5%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.67 54.0 4.44e-01 100.0% 60.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.67 53.0 4.00e-01 100.0% 99.0%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 54.0 4.47e-01 100.0% 64.8%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 52.0 4.29e-01 100.0% 57.1%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 54.0 3.92e-01 100.0% 43.1%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.66 56.0 4.44e-01 100.0% 61.0%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.66 50.0 4.11e-01 100.0% 48.8%
1fjeB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 53.0 4.23e-01 100.0% 61.7%
1g5aA03 3.90.400.10 Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 0.65 50.0 4.22e-01 97.1% 87.5%
1cvjH02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 52.0 4.74e-01 100.0% 69.2%
4h40A02 2.60.40.3740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 53.0 3.62e-01 100.0% 52.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.65 49.0 3.88e-01 100.0% 53.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.65 52.0 3.99e-01 100.0% 59.6%
3gdzB00 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.64 52.0 3.80e-01 97.1% 48.6%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 49.0 3.58e-01 100.0% 58.7%
3mggB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 49.0 3.36e-01 100.0% 28.0%
2e5jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 52.0 4.03e-01 100.0% 52.3%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.64 51.0 4.17e-01 100.0% 78.2%
3fkeA02 2.10.10.70 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain 0.64 52.0 4.65e-01 100.0% 65.4%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 48.0 3.57e-01 100.0% 73.3%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.62 47.0 3.65e-01 97.1% 98.0%
2xhcA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.62 51.0 3.85e-01 100.0% 51.6%
5jpnC01 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.62 53.0 3.59e-01 100.0% 33.8%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 3.71e-01 100.0% 50.5%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.61 53.0 4.28e-01 100.0% 67.6%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 51.0 3.08e-01 100.0% 24.3%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.61 46.0 3.64e-01 100.0% 59.4%
3iayA06 6.10.140.1540 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.58e-01 94.3% 92.1%
4qflA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.60 48.0 3.18e-01 100.0% 47.4%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 46.0 3.29e-01 97.1% 58.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.73e-01 100.0% 58.3%
4u9rA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 47.0 4.06e-01 100.0% 70.8%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.17e-01 100.0% 39.0%
1zu0A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.59 48.0 3.52e-01 100.0% 58.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.73e-01 100.0% 74.7%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.38e-01 100.0% 47.6%
3m8uA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.57 45.0 3.04e-01 100.0% 45.6%
6m36O01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 44.0 3.44e-01 100.0% 36.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.57e-01 100.0% 64.1%
2yocB05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 42.0 3.12e-01 100.0% 36.6%
1nj8A03 3.30.110.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS 0.53 38.0 3.43e-01 91.4% 95.1%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 37.0 2.80e-01 91.4% 56.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.99e-01 97.1% 51.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.98e-01 97.1% 64.1%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932614 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.84 70.0 5.71e-01 100.0% 55.7%
5026872 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.83 69.0 5.56e-01 100.0% 54.8%
4958887 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.83 71.0 6.39e-01 100.0% 70.0%
4461494 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.82 69.0 5.73e-01 100.0% 55.4%
4398030 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.81 67.0 5.25e-01 100.0% 50.0%
4058379 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.81 67.0 5.60e-01 100.0% 60.0%
4403260 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.80 64.0 5.21e-01 100.0% 53.3%
5257 304.8.1.6 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_3 0.77 63.0 5.18e-01 100.0% 50.0%
4995433 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.77 66.0 5.01e-01 100.0% 41.2%
3969863 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.77 61.0 5.16e-01 100.0% 57.4%
3580296 109.4.1.2728 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, TPR_IMB1 0.77 63.0 3.53e-01 100.0% 8.1%
3980814 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.77 65.0 4.37e-01 100.0% 25.9%
3203939 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.75 63.0 5.14e-01 100.0% 55.7%
4296471 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.75 61.0 5.02e-01 100.0% 57.1%
4366166 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.75 62.0 5.05e-01 100.0% 57.1%
3698788 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.74 62.0 4.51e-01 100.0% 41.9%
4980036 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.74 58.0 4.28e-01 100.0% 39.1%
3680963 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.74 62.0 5.05e-01 100.0% 80.0%
3989708 304.4.1.76 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DrrA1-3_C 0.73 62.0 5.27e-01 100.0% 61.7%
3326846 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.73 61.0 4.56e-01 100.0% 46.3%
3649287 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.73 62.0 5.79e-01 100.0% 93.3%
4048587 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.73 61.0 4.94e-01 100.0% 60.0%
4093818 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.73 60.0 4.81e-01 100.0% 53.3%
4388157 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.73 58.0 4.96e-01 100.0% 61.5%
4121019 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.72 57.0 4.90e-01 100.0% 60.0%
3715575 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.72 58.0 4.38e-01 100.0% 96.8%
4070496 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.72 57.0 4.65e-01 100.0% 53.3%
4080258 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.71 59.0 4.73e-01 100.0% 53.3%
3937907 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.71 58.0 4.27e-01 100.0% 43.8%
4018423 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.71 56.0 3.93e-01 100.0% 27.4%
3774122 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.71 58.0 3.97e-01 100.0% 31.4%
3623476 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.71 57.0 4.35e-01 100.0% 47.4%
3185861 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.70 57.0 4.39e-01 100.0% 65.6%
4156338 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.70 57.0 4.62e-01 100.0% 53.3%
4996559 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 4.64e-01 100.0% 80.0%
4025269 310.1.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.69 58.0 4.00e-01 97.1% 56.8%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.69 57.0 4.35e-01 100.0% 62.2%
3339604 304.9.1.47 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 0.69 59.0 4.05e-01 100.0% 37.6%
5011011 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.68 56.0 4.74e-01 100.0% 70.8%
3476964 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.68 57.0 4.06e-01 100.0% 39.1%
5072944 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 4.80e-01 100.0% 93.3%
3304324 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.68 56.0 3.86e-01 100.0% 56.3%
4049318 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.68 56.0 4.25e-01 97.1% 57.8%
3259246 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 52.0 4.37e-01 100.0% 57.3%
4109532 304.9.1.178 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc, SET1_RBD 0.66 54.0 3.29e-01 100.0% 17.3%
3934946 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 50.0 3.19e-01 100.0% 65.3%
3198690 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.66 54.0 4.50e-01 100.0% 60.0%
3182090 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 51.0 4.25e-01 97.1% 65.3%
3600702 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.66 51.0 3.04e-01 97.1% 11.1%
5041711 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 54.0 4.43e-01 100.0% 57.1%
5046509 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 4.17e-01 100.0% 65.3%
3220963 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 3.23e-01 100.0% 64.2%
3269336 310.1.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.63 51.0 3.61e-01 97.1% 47.5%
4180000 304.9.1.38 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.63 50.0 3.90e-01 100.0% 50.0%
4243181 387.1.5.3 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Toxin_3 0.62 48.0 4.23e-01 97.1% 80.0%
4090109 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.61 46.0 3.02e-01 100.0% 20.0%
3877696 101.1.2.164 ↗ alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.60 49.0 3.74e-01 100.0% 49.0%
4565948 304.37.1.0 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.60 44.0 3.64e-01 100.0% 52.2%
2417935 101.1.2.192 ↗ alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.60 47.0 3.98e-01 100.0% 87.1%
4937876 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 47.0 3.40e-01 100.0% 47.2%
4269299 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.59 48.0 3.15e-01 100.0% 22.0%
5073785 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.59 44.0 3.46e-01 100.0% 57.1%
3997898 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.59 49.0 3.55e-01 100.0% 53.0%
3580841 101.1.2.589 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7516 0.59 49.0 3.76e-01 100.0% 74.4%
5070705 11.1.1.1402 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_recep 0.59 44.0 3.28e-01 100.0% 35.8%
5026706 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.33e-01 100.0% 52.3%
4978321 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.58 45.0 3.61e-01 100.0% 65.6%
3253833 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.92e-01 100.0% 78.6%
3942501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.60e-01 100.0% 76.7%
4377282 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.58 41.0 3.39e-01 97.1% 52.6%
5042411 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 45.0 3.63e-01 100.0% 63.5%
5057773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.58e-01 97.1% 69.3%
2806794 11.1.5.27 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.55 45.0 3.14e-01 100.0% 29.3%
2841967 5089.1.1.7 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › PF26164 0.54 44.0 2.72e-01 100.0% 57.1%
3390936 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.53 39.0 3.13e-01 100.0% 58.0%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.53 39.0 2.29e-01 88.6% 13.2%
3301908 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.53 40.0 3.17e-01 100.0% 58.9%
3743466 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.51 38.0 2.96e-01 100.0% 50.5%
4979355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.01e-01 100.0% 55.5%
3791337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 2.87e-01 100.0% 43.6%
4878533 304.136.1.1 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 0.50 35.0 2.63e-01 100.0% 56.0%