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YP_008060050.1

Arc-Vir

NC_021335__YP_008060050.1__M193-gp066__00066

Identity

Accession:
NC_021335 ↗
Protein ID:
YP_008060050.1 ↗
Kingdom:
archaea

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Mincapvirus› Halorubrum_tailed_phage_7

TaxID: 2847108

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-246
PDB
Domain cluster: rep: KC292026__AGM11432.1__HGTV1-134__00102__D37-254
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.61 13.0 2.97e-01 97.3% 90.2%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.59 23.0 3.71e-01 98.2% 92.9%
1wpuA00 3.40.1510.10 Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP 0.57 26.0 3.16e-01 97.3% 62.6%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 22.0 3.55e-01 98.2% 100.0%
1gd7A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 24.0 3.32e-01 96.9% 83.5%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 24.0 3.50e-01 97.8% 92.2%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 23.0 3.46e-01 87.4% 98.9%
4b43A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 24.0 3.21e-01 96.4% 81.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 31.0 4.34e-01 100.0% 96.5%
3705135 101.17.1.3 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.61 15.0 2.50e-01 100.0% 52.8%
4469294 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.60 26.0 3.48e-01 98.2% 74.2%
5055355 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 24.0 3.86e-01 98.2% 96.7%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 19.0 3.33e-01 98.2% 100.0%
4028299 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 19.0 2.80e-01 97.3% 64.2%
3498230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 17.0 2.84e-01 96.4% 75.0%
3479176 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 17.0 2.83e-01 96.4% 75.0%
317158 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.53 24.0 3.29e-01 96.4% 82.9%
3786548 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 23.0 3.55e-01 95.5% 97.9%
4965857 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 15.0 2.70e-01 97.3% 78.3%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 25.0 3.47e-01 97.8% 91.8%
D2 high residues 318-364
PDB