←Back to structures
YP_008060059.1
Arc-VirNC_021335__YP_008060059.1__M193-gp098__00075
Identity
- Accession:
- NC_021335 ↗
- Protein ID:
- YP_008060059.1 ↗
- Kingdom:
- archaea
Quality
79.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Hafunaviridae›
Mincapvirus›
Halorubrum_tailed_phage_7
TaxID: 2847108
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 51.0 | 5.47e-01 | 87.7% | 90.7% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 5.15e-01 | 78.5% | 83.3% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.68 | 54.0 | 5.80e-01 | 87.7% | 100.0% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 3.57e-01 | 72.3% | 39.2% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 46.0 | 3.67e-01 | 72.3% | 44.8% |
| 3e6mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 46.0 | 3.55e-01 | 72.3% | 41.1% |
| 1g2hA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 51.0 | 5.30e-01 | 87.7% | 90.2% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 46.0 | 3.46e-01 | 70.8% | 39.7% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 53.0 | 3.76e-01 | 86.2% | 73.7% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.66 | 58.0 | 4.45e-01 | 98.5% | 77.3% |
| 2xvcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 4.94e-01 | 80.0% | 87.5% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 3.58e-01 | 72.3% | 46.2% |
| 6az1a00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.66e-01 | 78.5% | 70.8% |
| 5douA01 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.64 | 55.0 | 4.09e-01 | 98.5% | 68.4% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.64 | 56.0 | 4.95e-01 | 98.5% | 78.7% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 53.0 | 4.63e-01 | 93.8% | 81.9% |
| 2ys9A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 46.0 | 4.55e-01 | 80.0% | 85.7% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 51.0 | 4.47e-01 | 92.3% | 79.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 49.0 | 4.24e-01 | 93.8% | 78.6% |
| 2amxB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 51.0 | 3.19e-01 | 100.0% | 19.4% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 43.0 | 3.25e-01 | 81.5% | 38.1% |
| 3uitA01 | 1.20.1440.360 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.50 | 37.0 | 3.13e-01 | 84.6% | 80.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3509159 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.74 | 48.0 | 5.01e-01 | 73.8% | 73.3% |
| 3944370 | 101.1.1.318 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF30335 | 0.73 | 60.0 | 5.88e-01 | 89.2% | 82.9% |
| 5024511 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 51.0 | 5.68e-01 | 76.9% | 96.0% |
| 4010213 | 101.1.1.218 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS1 | 0.73 | 50.0 | 5.56e-01 | 75.4% | 94.0% |
| 4862437 | 101.1.1.198 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KorB | 0.72 | 49.0 | 4.89e-01 | 70.8% | 75.0% |
| 5011648 | 101.1.1.368 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 | 0.72 | 51.0 | 5.67e-01 | 73.8% | 96.0% |
| 3753093 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.72 | 50.0 | 5.03e-01 | 76.9% | 72.3% |
| 4002185 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.71 | 50.0 | 4.74e-01 | 75.4% | 62.7% |
| 139963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 51.0 | 5.47e-01 | 87.7% | 90.7% |
| 5056682 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 49.0 | 4.79e-01 | 75.4% | 67.1% |
| 3977374 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 55.0 | 5.93e-01 | 83.1% | 100.0% |
| 3505559 | 101.1.6.19 ↗ | alpha arrays › HTH › HTH › TrpR › PAX | 0.70 | 51.0 | 4.91e-01 | 78.5% | 73.3% |
| 3565285 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.70 | 48.0 | 4.85e-01 | 75.4% | 72.3% |
| 3819780 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.70 | 56.0 | 4.86e-01 | 87.7% | 95.0% |
| 3789627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 51.0 | 5.15e-01 | 78.5% | 81.5% |
| 3488459 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.68 | 50.0 | 4.69e-01 | 78.5% | 66.3% |
| 5044536 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 48.0 | 3.91e-01 | 73.8% | 40.8% |
| 3404418 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.68 | 49.0 | 4.82e-01 | 76.9% | 71.4% |
| 3278077 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 55.0 | 5.76e-01 | 92.3% | 96.7% |
| 5062650 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.67 | 60.0 | 4.78e-01 | 98.5% | 96.0% |
| 5016203 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.66 | 57.0 | 4.29e-01 | 98.5% | 73.1% |
| 4982913 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.65 | 45.0 | 3.74e-01 | 73.8% | 41.8% |
| 3942571 | 101.1.1.198 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KorB | 0.65 | 54.0 | 5.40e-01 | 90.8% | 92.3% |
| 3589364 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.65 | 52.0 | 4.05e-01 | 86.2% | 60.0% |
| 4955811 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.64 | 43.0 | 3.86e-01 | 73.8% | 50.0% |
| 4929137 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 43.0 | 3.79e-01 | 73.8% | 48.4% |
| 3330762 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 54.0 | 4.41e-01 | 93.8% | 66.1% |
| 5040755 | 101.1.1.251 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB | 0.62 | 52.0 | 4.48e-01 | 95.4% | 60.0% |
| 4947168 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 52.0 | 4.70e-01 | 93.8% | 85.6% |
| 3888859 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 47.0 | 4.07e-01 | 96.9% | 54.0% |
| 5042406 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 52.0 | 4.57e-01 | 96.9% | 87.4% |
| 3984129 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 4.86e-01 | 93.8% | 100.0% |
| 4927466 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 49.0 | 4.43e-01 | 93.8% | 84.4% |
| 5078302 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 49.0 | 4.29e-01 | 95.4% | 74.0% |
| 4342098 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 49.0 | 4.43e-01 | 100.0% | 72.6% |
| 4986198 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 49.0 | 4.46e-01 | 98.5% | 83.3% |
| 4193698 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.57 | 39.0 | 3.99e-01 | 76.9% | 75.0% |
| 3927372 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 48.0 | 4.46e-01 | 93.8% | 96.2% |
| 4949365 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.51 | 40.0 | 3.64e-01 | 87.7% | 74.4% |
D2
high
residues 74-134
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r24B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 48.0 | 4.31e-01 | 93.4% | 61.2% |
| 1jetA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 45.0 | 3.12e-01 | 93.4% | 71.3% |