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YP_008060089.1
Arc-VirNC_021335__YP_008060089.1__M193-gp068__00105
Identity
- Accession:
- NC_021335 ↗
- Protein ID:
- YP_008060089.1 ↗
- Kingdom:
- archaea
Quality
56.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Hafunaviridae›
Mincapvirus›
Halorubrum_tailed_phage_7
TaxID: 2847108
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-118
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3onqA01 | 1.20.5.5100 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 43.0 | 4.37e-01 | 97.7% | 69.0% |
| 3k2oB02 | 1.20.1280.270 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 52.0 | 5.14e-01 | 90.7% | 86.7% |
| 3ttvA02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.62 | 45.0 | 3.47e-01 | 79.1% | 34.6% |
| 2krxA01 | 3.90.940.40 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 | 0.62 | 47.0 | 4.18e-01 | 100.0% | 55.6% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.34e-01 | 93.0% | 92.9% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.56 | 39.0 | 3.83e-01 | 86.0% | 68.8% |
| 4g84A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 39.0 | 2.41e-01 | 79.1% | 12.0% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 39.0 | 3.73e-01 | 79.1% | 81.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4477905 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.65 | 52.0 | 3.44e-01 | 100.0% | 20.5% |
| 4583463 | 101.1.13.1 ↗ | alpha arrays › HTH › HTH › Flagellar transcriptional activator FlhD › FlhD | 0.63 | 55.0 | 4.74e-01 | 100.0% | 74.3% |
| 1575638 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.62 | 52.0 | 3.99e-01 | 93.0% | 57.4% |
| 3874591 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.57 | 40.0 | 2.70e-01 | 79.1% | 58.6% |
| 3760713 | 5074.1.1.0 ↗ | extended segments › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits | 0.55 | 41.0 | 4.01e-01 | 97.7% | 76.4% |
| 4678981 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 44.0 | 4.21e-01 | 90.7% | 94.0% |
| 3887917 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.51 | 41.0 | 2.66e-01 | 93.0% | 35.0% |
D2
medium
residues 144-252