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NC_021344.2__YP_008060551.1__Lw1_gp027__00028

Bact-Vir

NC_021344.2__YP_008060551.1__Lw1_gp027__00028

Identity

Accession:
NC_021344 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Escherichia_phage_Lw1

TaxID: 1307804

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-97
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 52.0 4.16e-01 93.4% 42.6%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 42.0 3.80e-01 87.9% 54.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.54 44.0 4.27e-01 93.4% 80.2%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.54 40.0 3.74e-01 80.2% 62.2%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.85e-01 93.4% 67.6%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.52e-01 95.6% 62.5%
4upkA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.53 41.0 2.62e-01 83.5% 45.0%
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.82e-01 82.4% 97.3%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.87e-01 93.4% 70.7%
4f9zA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.73e-01 82.4% 98.3%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 46.0 3.81e-01 100.0% 78.7%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.88e-01 100.0% 76.2%
2w39A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.24e-01 100.0% 78.5%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.54e-01 96.7% 64.8%
2hyxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.17e-01 84.6% 58.2%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 45.0 3.27e-01 100.0% 88.1%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 44.0 4.06e-01 96.7% 94.3%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 44.0 3.76e-01 100.0% 74.1%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.51 43.0 3.37e-01 94.5% 80.4%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.89e-01 95.6% 73.1%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.80e-01 95.6% 70.2%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 45.0 3.86e-01 100.0% 78.5%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 39.0 2.80e-01 83.5% 64.2%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.51 40.0 3.23e-01 87.9% 83.8%
5gu7C01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.65e-01 85.7% 91.9%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.50 39.0 3.94e-01 92.3% 85.6%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.38e-01 100.0% 80.4%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.75e-01 95.6% 70.3%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.81e-01 100.0% 74.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.70 40.0 3.14e-01 71.4% 26.7%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 39.0 3.40e-01 72.5% 37.0%
3739320 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 34.0 2.60e-01 70.3% 21.0%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.59 41.0 3.34e-01 87.9% 35.7%
4213613 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 45.0 4.24e-01 85.7% 89.1%
3360341 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.55 39.0 3.06e-01 86.8% 32.7%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.55 39.0 2.58e-01 86.8% 15.8%
4248887 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.55 44.0 3.94e-01 86.8% 75.4%
3730558 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.55 46.0 3.35e-01 94.5% 73.7%
3717941 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 38.0 2.33e-01 71.4% 29.4%
3231502 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 4.04e-01 89.0% 92.0%
4056475 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.53 45.0 4.36e-01 95.6% 96.1%
3988984 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 44.0 3.71e-01 93.4% 71.2%
3757999 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.53 44.0 3.13e-01 94.5% 71.9%
380523 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.53 44.0 3.42e-01 93.4% 78.2%
3800736 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 44.0 3.08e-01 94.5% 56.8%
3415595 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 44.0 3.19e-01 94.5% 64.8%
4983234 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 40.0 3.21e-01 83.5% 77.8%
4018972 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 43.0 3.32e-01 93.4% 74.5%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 37.0 3.40e-01 90.1% 53.8%
3922315 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 43.0 3.06e-01 94.5% 61.6%
3520211 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 44.0 3.27e-01 95.6% 82.8%
3498989 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.52 43.0 3.13e-01 93.4% 60.0%
3650120 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 43.0 3.12e-01 95.6% 63.2%
1166895 2008.1.1.100 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.52 44.0 3.70e-01 94.5% 74.0%
4956219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 44.0 4.08e-01 95.6% 89.2%
3284638 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.51 42.0 3.71e-01 95.6% 97.9%
3400046 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.50 42.0 3.26e-01 95.6% 80.9%
3316300 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.50 42.0 3.19e-01 95.6% 81.2%