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NC_021344.2__YP_008060618.1__Lw1_gp095__00095

Bact-Vir

NC_021344.2__YP_008060618.1__Lw1_gp095__00095

Identity

Accession:
NC_021344 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Escherichia_phage_Lw1

TaxID: 1307804

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-87
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.77 45.0 5.56e-01 98.8% 96.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 44.0 5.38e-01 97.6% 90.4%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.76 46.0 5.47e-01 100.0% 92.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 46.0 5.60e-01 100.0% 100.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 44.0 5.28e-01 95.2% 88.9%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 5.58e-01 96.4% 100.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 49.0 5.57e-01 100.0% 91.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 5.03e-01 98.8% 78.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 4.84e-01 100.0% 69.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 5.67e-01 100.0% 96.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 46.0 5.42e-01 100.0% 92.9%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 46.0 5.49e-01 100.0% 100.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 5.00e-01 100.0% 73.1%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 5.24e-01 100.0% 89.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 39.0 4.93e-01 88.0% 95.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.87e-01 100.0% 73.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 46.0 4.71e-01 96.4% 73.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 42.0 3.64e-01 100.0% 42.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 51.0 5.26e-01 100.0% 90.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 44.0 3.93e-01 96.4% 49.6%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 4.25e-01 96.4% 66.3%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.76e-01 100.0% 83.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.71e-01 96.4% 90.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.63 45.0 4.12e-01 100.0% 57.8%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.59 53.0 4.08e-01 100.0% 76.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.73e-01 100.0% 85.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.65e-01 100.0% 88.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 48.0 3.70e-01 100.0% 42.2%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 50.0 4.16e-01 100.0% 67.4%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 50.0 4.30e-01 100.0% 78.7%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.53 27.0 3.53e-01 95.2% 93.0%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 45.0 3.88e-01 97.6% 96.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 47.0 4.52e-01 100.0% 85.4%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.93e-01 100.0% 97.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 44.0 3.30e-01 100.0% 36.9%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.68e-01 95.2% 99.3%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 44.0 3.79e-01 98.8% 99.3%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.49e-01 92.8% 86.4%
2qyuA03 3.40.1850.10 Alpha Beta › 3-Layer(aba) Sandwich › HECT-like ubiquitin ligase fold › HECT-like ubiquitin ligase 0.50 34.0 3.58e-01 95.2% 78.7%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.69e-01 94.0% 100.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 50.0 6.07e-01 100.0% 92.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 50.0 6.08e-01 100.0% 92.7%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 48.0 5.84e-01 100.0% 90.9%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 49.0 5.69e-01 100.0% 86.7%
4429179 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 43.0 5.64e-01 98.8% 100.0%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 47.0 5.82e-01 100.0% 100.0%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 44.0 5.32e-01 100.0% 85.5%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 48.0 4.76e-01 100.0% 61.2%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 46.0 5.48e-01 98.8% 92.7%
3704356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.14e-01 100.0% 71.2%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 48.0 3.71e-01 97.6% 31.4%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 47.0 4.00e-01 100.0% 40.0%
4251669 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.73 56.0 6.07e-01 100.0% 97.1%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 4.78e-01 100.0% 65.9%
5037849 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 48.0 4.18e-01 100.0% 47.2%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.26e-01 100.0% 85.7%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 47.0 4.03e-01 100.0% 43.7%
3992026 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.69 38.0 4.21e-01 86.7% 67.7%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.19e-01 100.0% 77.6%
3412823 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.68 37.0 4.42e-01 85.5% 80.0%
3778012 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.67 38.0 3.79e-01 88.0% 52.9%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.49e-01 100.0% 98.5%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.69e-01 100.0% 63.8%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.07e-01 100.0% 77.8%
3402874 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 36.0 4.04e-01 86.7% 67.7%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 49.0 5.48e-01 100.0% 100.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 3.73e-01 100.0% 30.7%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 50.0 5.22e-01 100.0% 90.5%
3905176 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 46.0 5.14e-01 100.0% 93.8%
3395415 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 38.0 4.10e-01 86.7% 67.1%
4474739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.63e-01 96.4% 76.0%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.28e-01 100.0% 95.4%
3268923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.50e-01 100.0% 61.9%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 46.0 5.01e-01 100.0% 87.1%
3710595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.50e-01 100.0% 60.9%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 5.14e-01 98.8% 98.3%
3398841 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.65 37.0 3.99e-01 86.7% 66.7%
3410562 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.64 37.0 4.02e-01 86.7% 68.6%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.33e-01 100.0% 93.3%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 5.03e-01 94.0% 98.4%
3409941 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.63 37.0 4.05e-01 88.0% 70.0%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.92e-01 100.0% 82.4%
3924038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.78e-01 96.4% 85.3%
3415678 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 37.0 4.01e-01 86.7% 72.1%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 53.0 4.34e-01 100.0% 52.0%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.61 47.0 5.12e-01 98.8% 98.6%
3400388 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.60 37.0 4.11e-01 90.4% 78.5%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.60 36.0 3.92e-01 100.0% 75.4%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.59 40.0 3.74e-01 88.0% 55.8%
3249603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.72e-01 100.0% 90.7%
3899338 6.1.1.3 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 0.56 48.0 3.91e-01 96.4% 98.2%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.56 49.0 4.63e-01 100.0% 79.0%
3866571 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 51.0 3.18e-01 100.0% 21.8%
3466299 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.56 50.0 4.28e-01 100.0% 87.4%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.56 45.0 3.64e-01 100.0% 47.3%
4648652 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.55 43.0 3.99e-01 100.0% 65.7%
4557459 6.1.1.3 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL1 0.55 47.0 3.80e-01 96.4% 95.8%
3619225 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.54 40.0 3.13e-01 79.5% 46.7%
3659514 6.1.1.34 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF7910 0.53 47.0 4.05e-01 100.0% 98.5%
3471746 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 46.0 3.76e-01 98.8% 90.8%
3625996 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 39.0 3.69e-01 94.0% 65.0%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.53 49.0 4.33e-01 100.0% 89.6%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 47.0 3.72e-01 100.0% 57.6%
3226690 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.52 44.0 3.72e-01 95.2% 90.7%
3489469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.16e-01 96.4% 81.0%
4601333 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.51 43.0 3.68e-01 97.6% 96.6%
3691951 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 3.17e-01 88.0% 71.4%