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NC_021529.2__YP_008125467.1__VPFG_00320__00138
Bact-VirNC_021529.2__YP_008125467.1__VPFG_00320__00138
Identity
- Accession:
- NC_021529 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Mylasvirus›
Vibrio_phage_nt-1
TaxID: 115992
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 92-273
Domain cluster:
rep: IMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081842__D4-242
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 50.8 | 3.00e-13 | 90.1% | 85.5% |
| PF13353.12 | Fer4_12 | 30.7 | 5.00e-07 | 70.9% | 67.9% |
CATH (68)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.81 | 73.0 | 6.12e-01 | 98.4% | 59.8% |
| 1tv8B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.80 | 76.0 | 6.12e-01 | 100.0% | 59.2% |
| 3c8fA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 73.0 | 6.54e-01 | 100.0% | 78.4% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.77 | 59.0 | 5.40e-01 | 78.0% | 69.6% |
| 6y1xB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 73.0 | 6.47e-01 | 99.5% | 82.9% |
| 1r30A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 71.0 | 5.85e-01 | 98.9% | 58.7% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.65 | 60.0 | 5.75e-01 | 100.0% | 85.4% |
| 3dxiA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 54.0 | 4.55e-01 | 98.9% | 53.5% |
| 1itcA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 59.0 | 4.46e-01 | 100.0% | 80.0% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 38.0 | 4.41e-01 | 98.4% | 82.7% |
| 5tcgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 52.0 | 4.72e-01 | 100.0% | 65.5% |
| 3dmyA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.62 | 40.0 | 4.28e-01 | 98.9% | 72.4% |
| 4d8lA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.62 | 56.0 | 4.73e-01 | 97.8% | 59.5% |
| 3cz8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 57.0 | 5.13e-01 | 99.5% | 78.8% |
| 4ee9A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 56.0 | 4.64e-01 | 98.9% | 62.9% |
| 6fnuA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.61 | 56.0 | 4.74e-01 | 98.9% | 70.6% |
| 2a4aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 53.0 | 4.75e-01 | 100.0% | 68.0% |
| 1gw1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 55.0 | 4.38e-01 | 100.0% | 69.1% |
| 2qneA01 | 3.20.20.480 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Trimethylamine methyltransferase-like | 0.60 | 55.0 | 4.06e-01 | 98.9% | 39.8% |
| 3kzpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.60 | 56.0 | 5.11e-01 | 99.5% | 95.2% |
| 4l9yD00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.60 | 56.0 | 4.88e-01 | 100.0% | 73.2% |
| 3u80A00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.60 | 38.0 | 4.46e-01 | 98.4% | 90.6% |
| 1vhnA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 51.0 | 4.70e-01 | 100.0% | 70.5% |
| 6kmoB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 48.0 | 3.99e-01 | 85.7% | 79.9% |
| 4s3jB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 55.0 | 4.75e-01 | 100.0% | 74.3% |
| 1reqB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.59 | 37.0 | 4.24e-01 | 98.4% | 83.5% |
| 3nbkD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 28.0 | 3.01e-01 | 70.9% | 50.3% |
| 2bb0A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 51.0 | 4.38e-01 | 98.4% | 83.6% |
| 2zshA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 48.0 | 3.92e-01 | 90.7% | 87.6% |
| 4ac9C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 4.65e-01 | 100.0% | 85.2% |
| 2iqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 48.0 | 4.08e-01 | 98.9% | 56.6% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 34.0 | 3.91e-01 | 98.9% | 81.5% |
| 3nurA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 50.0 | 4.27e-01 | 98.9% | 67.8% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 37.0 | 4.23e-01 | 98.9% | 91.6% |
| 5mp7A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 4.82e-01 | 98.4% | 96.3% |
| 1yt8A03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 27.0 | 3.65e-01 | 97.3% | 90.1% |
| 1puiA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 4.46e-01 | 98.9% | 88.2% |
| 5hc2B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 50.0 | 4.06e-01 | 99.5% | 69.9% |
| 2wojC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.33e-01 | 100.0% | 73.2% |
| 3nvaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.32e-01 | 100.0% | 74.3% |
| 2a7rD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 50.0 | 4.18e-01 | 100.0% | 58.4% |
| 2nx2A00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 3.81e-01 | 99.5% | 70.2% |
| 3k6kA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.13e-01 | 98.9% | 74.1% |
| 3d7rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.13e-01 | 98.9% | 73.6% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.10e-01 | 98.4% | 75.1% |
| 3qh4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.04e-01 | 99.5% | 72.0% |
| 5yznA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.31e-01 | 98.9% | 88.9% |
| 2vk1A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.53 | 44.0 | 4.37e-01 | 100.0% | 85.6% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 3.88e-01 | 100.0% | 67.6% |
| 1sulB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 4.43e-01 | 98.9% | 85.6% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.26e-01 | 100.0% | 90.1% |
| 7b1xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.09e-01 | 99.5% | 75.3% |
| 7uvpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 4.16e-01 | 99.5% | 97.7% |
| 4n5hX00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 48.0 | 3.97e-01 | 100.0% | 73.7% |
| 4hxfB02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 4.16e-01 | 98.9% | 90.6% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 4.11e-01 | 100.0% | 77.9% |
| 1orvA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 4.20e-01 | 99.5% | 83.3% |
| 1u3dA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 32.0 | 3.35e-01 | 84.1% | 66.5% |
| 6oibA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 36.0 | 3.92e-01 | 94.5% | 86.1% |
| 3gdgA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 47.0 | 4.11e-01 | 99.5% | 91.4% |
| 1ni4A00 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.51 | 46.0 | 3.73e-01 | 99.5% | 57.7% |
| 1um9A00 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.51 | 42.0 | 3.49e-01 | 88.5% | 56.2% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 47.0 | 4.07e-01 | 100.0% | 88.7% |
| 2d5lA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 46.0 | 4.11e-01 | 99.5% | 83.7% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 46.0 | 3.52e-01 | 98.9% | 49.9% |
| 4u63A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 32.0 | 3.28e-01 | 97.8% | 64.4% |
| 1qs0A00 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.50 | 45.0 | 3.51e-01 | 98.9% | 52.8% |
| 3k9gA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 45.0 | 4.22e-01 | 100.0% | 79.6% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056789 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 76.0 | 6.18e-01 | 100.0% | 53.9% |
| 5011835 | 2002.1.1.446 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3463 | 0.86 | 77.0 | 6.16e-01 | 100.0% | 52.3% |
| 4955076 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 78.0 | 6.28e-01 | 100.0% | 54.1% |
| 4975797 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 61.0 | 5.07e-01 | 99.5% | 45.5% |
| 4984802 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 77.0 | 6.20e-01 | 100.0% | 54.0% |
| 4989502 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 79.0 | 5.78e-01 | 100.0% | 40.9% |
| 4932259 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 76.0 | 6.11e-01 | 100.0% | 53.0% |
| 5073323 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 79.0 | 6.12e-01 | 100.0% | 49.6% |
| 4960360 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.84 | 78.0 | 6.18e-01 | 100.0% | 51.8% |
| 5044211 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 80.0 | 5.87e-01 | 100.0% | 43.1% |
| 5064319 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 77.0 | 6.12e-01 | 99.5% | 52.1% |
| 5053419 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 77.0 | 6.13e-01 | 100.0% | 52.8% |
| 5051987 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 72.0 | 5.80e-01 | 100.0% | 50.8% |
| 4929847 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 76.0 | 6.03e-01 | 98.9% | 52.7% |
| 4955890 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 75.0 | 5.90e-01 | 100.0% | 50.6% |
| 5011731 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 72.0 | 5.70e-01 | 97.3% | 48.8% |
| 5057587 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 75.0 | 5.98e-01 | 100.0% | 51.9% |
| 5082788 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 76.0 | 6.07e-01 | 100.0% | 53.8% |
| 4941301 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 76.0 | 6.17e-01 | 99.5% | 55.7% |
| 4942944 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 76.0 | 5.93e-01 | 100.0% | 50.6% |
| 5058582 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 77.0 | 6.00e-01 | 100.0% | 51.9% |
| 3954200 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 76.0 | 6.63e-01 | 100.0% | 68.8% |
| 4987866 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 75.0 | 5.92e-01 | 100.0% | 51.3% |
| 4981837 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 77.0 | 5.51e-01 | 100.0% | 39.1% |
| 2322645 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 72.0 | 5.28e-01 | 100.0% | 39.3% |
| 4963770 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 77.0 | 5.95e-01 | 100.0% | 50.3% |
| 4970466 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 73.0 | 5.70e-01 | 98.9% | 48.1% |
| 5049709 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 76.0 | 5.85e-01 | 100.0% | 48.6% |
| 4940420 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 77.0 | 6.28e-01 | 99.5% | 63.0% |
| 2323965 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.80 | 73.0 | 5.83e-01 | 100.0% | 51.5% |
| 4997245 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 74.0 | 5.58e-01 | 100.0% | 44.0% |
| 5049156 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 76.0 | 5.71e-01 | 100.0% | 52.3% |
| 4997473 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 69.0 | 5.78e-01 | 91.8% | 56.2% |
| 4955961 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 76.0 | 6.21e-01 | 100.0% | 59.7% |
| 4954342 | 2002.1.1.224 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM | 0.80 | 64.0 | 4.98e-01 | 100.0% | 41.9% |
| 5061139 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 73.0 | 5.69e-01 | 100.0% | 48.9% |
| 4932624 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 75.0 | 6.68e-01 | 100.0% | 79.6% |
| 5046504 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 75.0 | 5.95e-01 | 100.0% | 55.2% |
| 4260578 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.78 | 75.0 | 6.21e-01 | 100.0% | 63.1% |
| 5047699 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 74.0 | 6.79e-01 | 100.0% | 80.0% |
| 5050734 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 74.0 | 5.82e-01 | 100.0% | 54.3% |
| 5081167 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 74.0 | 5.52e-01 | 100.0% | 45.4% |
| 4280202 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 72.0 | 6.38e-01 | 100.0% | 70.6% |
| 4949910 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 71.0 | 5.47e-01 | 98.4% | 46.6% |
| 5047651 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 73.0 | 5.56e-01 | 100.0% | 52.1% |
| 4014358 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.77 | 72.0 | 5.68e-01 | 98.9% | 53.4% |
| 4983888 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 69.0 | 5.69e-01 | 99.5% | 56.7% |
| 4128825 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 71.0 | 5.78e-01 | 100.0% | 56.2% |
| 5082998 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 73.0 | 5.77e-01 | 100.0% | 65.0% |
| 4564319 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.76 | 71.0 | 5.60e-01 | 98.9% | 52.4% |
| 5015859 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 71.0 | 5.83e-01 | 98.9% | 57.1% |
| 4037572 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.76 | 71.0 | 5.72e-01 | 98.9% | 55.2% |
| 4990429 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 5.62e-01 | 100.0% | 54.4% |
| 4834102 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 69.0 | 6.63e-01 | 97.8% | 86.1% |
| 4177659 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.76 | 71.0 | 5.66e-01 | 98.9% | 53.6% |
| 4985797 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 6.34e-01 | 100.0% | 77.1% |
| 3602513 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.76 | 71.0 | 5.58e-01 | 98.9% | 60.6% |
| 3963100 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.76 | 71.0 | 5.73e-01 | 98.9% | 55.7% |
| 4225863 | 2002.1.1.127 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,LIAS_N | 0.76 | 72.0 | 5.92e-01 | 100.0% | 71.5% |
| 4517601 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 5.83e-01 | 100.0% | 68.1% |
| 4085723 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 5.82e-01 | 100.0% | 68.1% |
| 4996057 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 69.0 | 5.69e-01 | 98.9% | 58.0% |
| 5015934 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 70.0 | 5.73e-01 | 100.0% | 60.6% |
| 4995727 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 70.0 | 6.23e-01 | 99.5% | 73.6% |
| 4151287 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 66.0 | 5.57e-01 | 100.0% | 72.0% |
| 4942121 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.56e-01 | 100.0% | 78.2% |
| 137563 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.60 | 56.0 | 5.11e-01 | 99.5% | 95.2% |
| 3928585 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.60 | 54.0 | 5.03e-01 | 99.5% | 78.7% |
| 4934120 | 2002.1.1.418 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF7388 | 0.59 | 55.0 | 4.77e-01 | 98.9% | 73.0% |
| 5058048 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.59 | 31.0 | 3.47e-01 | 74.7% | 64.3% |
| 3734299 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.57 | 52.0 | 4.14e-01 | 98.4% | 79.5% |
| 3288701 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.56 | 46.0 | 3.77e-01 | 89.6% | 60.3% |
| 4611584 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.55 | 43.0 | 4.51e-01 | 98.9% | 87.1% |
| 4963532 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.55 | 46.0 | 3.74e-01 | 89.0% | 61.8% |
| 3953699 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.54 | 45.0 | 3.75e-01 | 89.6% | 65.4% |
| 4158413 | 7574.1.1.11 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › DXP_synthase_N | 0.53 | 44.0 | 3.74e-01 | 88.5% | 90.5% |
| None | — | 0.53 | 44.0 | 3.87e-01 | 88.5% | 89.5% | |
| 10703 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.53 | 45.0 | 3.61e-01 | 91.2% | 58.0% |
| None | — | 0.52 | 47.0 | 3.79e-01 | 98.9% | 61.8% | |
| 5052546 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.51 | 46.0 | 3.84e-01 | 98.9% | 64.9% |
D2
medium
residues 16-91
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2knoA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 37.0 | 3.29e-01 | 100.0% | 41.8% |
| 2e1mC01 | 3.30.70.2100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 30.0 | 3.18e-01 | 97.4% | 61.8% |
| 6f7bA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 37.0 | 2.54e-01 | 77.6% | 55.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3559486 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.63 | 38.0 | 3.14e-01 | 100.0% | 32.9% |
| 3219839 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 2.69e-01 | 88.2% | 43.7% |