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NC_021532.1__YP_008125992.1__M610_gp021__00021

Bact-Vir

NC_021532.1__YP_008125992.1__M610_gp021__00021

Identity

Accession:
NC_021532 ↗
Kingdom:
phage

Quality

55.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_vB_AmaP_AD45-P1

TaxID: 1300004

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1092-1234
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.71 53.0 5.85e-01 82.5% 97.4%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 44.0 4.97e-01 77.6% 87.7%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 46.0 5.31e-01 96.5% 98.0%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 44.0 3.44e-01 73.4% 97.7%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 4.39e-01 76.2% 83.8%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 33.0 3.96e-01 79.0% 80.4%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 33.0 3.81e-01 77.6% 76.3%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.57 44.0 4.54e-01 80.4% 85.7%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.76e-01 91.6% 79.7%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 4.56e-01 84.6% 91.6%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 35.0 3.92e-01 79.0% 81.7%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 36.0 3.91e-01 72.7% 78.4%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 4.09e-01 86.0% 91.0%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 32.0 3.44e-01 90.9% 66.4%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.50e-01 85.3% 88.9%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 4.38e-01 88.8% 97.3%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.54 44.0 4.06e-01 88.1% 75.8%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.95e-01 97.9% 86.9%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 4.40e-01 86.7% 93.0%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 4.00e-01 87.4% 90.9%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.78e-01 83.9% 87.5%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 34.0 3.69e-01 70.6% 80.0%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 4.31e-01 79.7% 100.0%
3ks7A01 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.52 41.0 3.66e-01 85.3% 93.4%
2bgoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 4.32e-01 79.7% 98.3%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.52 40.0 4.06e-01 90.9% 83.5%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 4.19e-01 86.0% 98.6%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.74e-01 72.7% 96.2%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.92e-01 88.1% 98.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 35.0 3.48e-01 71.3% 92.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604637 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.64 47.0 5.15e-01 100.0% 93.0%
3488512 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 41.0 4.48e-01 86.0% 82.6%
4959958 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.59 39.0 4.38e-01 79.7% 86.4%
5041250 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 42.0 4.80e-01 82.5% 100.0%
1697323 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.58 39.0 4.57e-01 83.9% 97.0%
3925162 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.58 43.0 4.89e-01 88.8% 99.1%
3796384 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 42.0 4.52e-01 89.5% 86.4%
3933402 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 41.0 4.45e-01 96.5% 89.6%
3898561 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 32.0 3.77e-01 95.1% 78.9%
3597601 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 44.0 4.66e-01 81.1% 90.8%
3708445 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 44.0 4.64e-01 80.4% 94.6%
875 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.57 44.0 4.54e-01 80.4% 85.7%
5041017 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 4.12e-01 80.4% 93.3%
3785564 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.57 44.0 4.76e-01 90.9% 95.8%
3358216 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.57 32.0 3.56e-01 89.5% 69.1%
5014000 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 46.0 4.74e-01 85.3% 97.0%
3477921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 46.0 4.54e-01 89.5% 80.6%
3456138 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.56 41.0 3.39e-01 74.1% 80.8%
3233728 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 38.0 4.02e-01 73.4% 77.6%
3597814 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.56 43.0 4.31e-01 81.1% 86.7%
4665454 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.56 42.0 4.58e-01 81.1% 95.0%
3258806 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 38.0 4.43e-01 80.4% 99.0%
1014044 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 44.0 4.15e-01 83.9% 88.1%
3270665 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.56 44.0 4.72e-01 87.4% 96.0%
3601278 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 4.63e-01 90.2% 87.6%
3486965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 3.75e-01 79.0% 66.0%
3939866 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 4.61e-01 90.2% 100.0%
3611465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 4.66e-01 88.8% 94.3%
3706855 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 4.24e-01 79.0% 90.7%
3194240 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 44.0 4.59e-01 90.9% 93.1%
3628503 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 45.0 4.42e-01 88.1% 91.0%
3792375 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 35.0 3.85e-01 89.5% 79.1%
3485290 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 43.0 3.72e-01 86.7% 60.4%
3714782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 45.0 4.54e-01 89.5% 92.4%
5045891 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 4.16e-01 88.8% 88.3%
5056603 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 42.0 4.28e-01 81.8% 98.6%
3868830 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 38.0 3.70e-01 90.2% 65.6%
3212872 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 4.35e-01 83.9% 96.5%
4991357 11.1.1.131 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EB_dh 0.53 45.0 3.80e-01 93.7% 74.4%
4048098 10.32.1.243 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.53 42.0 4.38e-01 87.4% 89.6%
3941822 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 40.0 3.99e-01 80.4% 99.3%
3879388 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 39.0 3.68e-01 79.0% 93.3%
3272798 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.52 44.0 4.54e-01 90.2% 96.3%
3429922 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.52 37.0 3.76e-01 74.1% 74.5%
3353758 10.32.1.193 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.52 39.0 4.18e-01 79.0% 97.5%
5038393 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 40.0 4.14e-01 86.7% 87.4%
3429849 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.51 37.0 3.57e-01 76.2% 82.9%
3451911 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.51 41.0 3.68e-01 84.6% 99.5%
2997059 9.13.1.5 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.51 38.0 3.97e-01 79.7% 83.8%
3599907 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 4.36e-01 90.2% 97.7%
4615128 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 4.16e-01 90.9% 96.7%
D2 medium residues 610-675
PDB
Domain cluster: representative